Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01412 | ATGGCCTCTACTTCTTCCAAGAGACATGATCACTACAAGGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGTACCTACCCTACGCCCGAGATGGCTGCTGCTGCCTACGACGTAGCTGCACTCGCACTCAAGGGTTGTAATGCTGTTCTCAACTTCCCTGACTTGATTGGTTCCTACCCGGTTCCGGCTTCCTCATCCCCAGCCGATATCCGTTTTGCTGCTGCTGCTGCCGCCGCTTCGAAAAAAGTTGATGATCAAGGAGAAAACAATTACCATAGCTCTCACTACCAGTCTCCACCAACTAATGAATTCGTCGATGAAGAGGCGTTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCGGAAGGAATGCTGTTGTCGCCCCCACGAATGAGCTCGTCGCCGTCTCGACACGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCATTAG | 510 | 51.96 | MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDLIGSYPVPASSSPADIRFAAAAAAASKKVDDQGENNYHSSHYQSPPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 20629204 | 20629713 | - | Lsi07G014120.1 | Lsi07g01412 | 667834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01412 | 169 | Coils | Coil | 169 | 169 | - | - | |
Lsi07g01412 | 169 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi07g01412 | 169 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 | 5 | 168 | - | - | |
Lsi07g01412 | 169 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 168 | - | - | |
Lsi07g01412 | 169 | SUPERFAMILY | DNA-binding domain | 11 | 68 | IPR016177 | GO:0003677 | |
Lsi07g01412 | 169 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi07g01412 | 169 | Gene3D | AP2/ERF domain | 10 | 68 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi07g01412 | 169 | Pfam | AP2 domain | 11 | 59 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi07g01412 | 169 | SMART | rav1_2 | 11 | 75 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01412 | Lsi-Chr7:20629204 | Lsi05g01266 | Lsi-Chr5:20431416 | 7.60E-41 | dispersed | |
Lsi07g01412 | Lsi-Chr7:20629204 | Lsi09g00309 | Lsi-Chr9:3150495 | 5.00E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25690 | PF00847 | AP2 | 5.60E-11 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01412 | - | - | csv:101202953 | 310.071 |