Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01412 ATGGCCTCTACTTCTTCCAAGAGACATGATCACTACAAGGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGTACCTACCCTACGCCCGAGATGGCTGCTGCTGCCTACGACGTAGCTGCACTCGCACTCAAGGGTTGTAATGCTGTTCTCAACTTCCCTGACTTGATTGGTTCCTACCCGGTTCCGGCTTCCTCATCCCCAGCCGATATCCGTTTTGCTGCTGCTGCTGCCGCCGCTTCGAAAAAAGTTGATGATCAAGGAGAAAACAATTACCATAGCTCTCACTACCAGTCTCCACCAACTAATGAATTCGTCGATGAAGAGGCGTTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCGGAAGGAATGCTGTTGTCGCCCCCACGAATGAGCTCGTCGCCGTCTCGACACGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCATTAG 510 51.96 MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDLIGSYPVPASSSPADIRFAAAAAAASKKVDDQGENNYHSSHYQSPPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20629204 20629713 - Lsi07G014120.1 Lsi07g01412 667834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01412 169 Coils Coil 169 169 - -
Lsi07g01412 169 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Lsi07g01412 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 168 - -
Lsi07g01412 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 168 - -
Lsi07g01412 169 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Lsi07g01412 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Lsi07g01412 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Lsi07g01412 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Lsi07g01412 169 SMART rav1_2 11 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01412 Lsi-Chr7:20629204 Lsi05g01266 Lsi-Chr5:20431416 7.60E-41 dispersed
Lsi07g01412 Lsi-Chr7:20629204 Lsi09g00309 Lsi-Chr9:3150495 5.00E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25690 PF00847 AP2 5.60E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01412 - - csv:101202953 310.071