Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01415 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCGATTGAGAAGTGAAGCACAGCCGCCATTTCCAGCTTGCCATTTGCAGTTGCCCACTTCAATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCTAAAGACACCTCTGCTACCGCCCGATCCCCGTCCATCCGCCCGGTTGCACTCTCCGTCGAGAAGCAGAACATCAGGCTCCCCCCGCTATCCGCCACCAACCAGCAGATCAAGCAAGAGTTTTGGAAAGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGTTTGATGATGATGATTCTTCCATTAACAGCGCCAAGAGGAAGAGAGAGTGCAGAGACGACGCCGGAGACGGACTAATTCTGAGCCAATTCGGCAGTGGAGGTGGGAGTTTCTGGTTTCATCAGCCTGGTGGGGATGAAGAAGGACTCTGTTTTCTTCCTGGAAGTGAAGTAATTTCGCCGCCGTCACCATTTTTGTCAGAGATCGCCGATTTAGGAGAAGGAAATGATGGAGAAAGCAGCCATGTGAAGGCTCAGGAAGGCTCCGGTTCAGGTTCGGGATCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTGAGGAGAAGAGTAACAACAGAGAATGTTTCAGCAGCAGCAACAGCAGTGCCAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGCTACTGGTTTGGAGAATGAAAGGGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTAGAAGCAATTGGATCAAAGAACATTGGTTTGATTAACCATTTGATAGATAAACTTGGGAGTCAAGCTTCACCAAGAGGCTCATCACCAATTTCACGTTTGATTGCATATTACACAGAGGCTTTAGCAGTTAGAGTGAGCAGAGTTTGGCCACAGGTGTTTCACATAAGGACACCGAGGGAATACGATCCAACGGAGGACGATGCAGGGACAGCGTTACGGCTGCTAAACGAGGTAAGCCCGATCCCGAAATTCATCCACTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGAAAAGACAGGGTTCACATCATAGACTTTGACATAAAACAAGGGCTGCAATGGCCAAGCTTGTTCCAAAGTTTGGCATCTAGAACAAACCCTCCAAGTCATGTGCGAATCACCGGGATCGGTGAGTCGAAGCAGGAATTGAACGAAACGGGAGATAGGCTAGCAGGGTTCGCCGAGGCATTGAGGCTGCCGTTCGAGTTCCATGCCGTGGTGGACCGGTTGGAAGATGTAAGACTGTGGATGCTTCATGTCAAGGAGCAAGAAAGTGTAGGAGTGAATTGCATTCTCCAACTGCACAAAACACTGTATGATAGCAATGGAGGAGCATTGAGGGACTTTTTGGGGCTCATAAGAAGCACAAACCCAAGCATTGTTGTCATGGCTGAACAAGAAGCCGAGCACAACGAACCGAGGTTAGAGACTCGAGTTGTAGCCACATTGAAATACTACGCCGCCATATTCGATTCCCTCGATGCTAGTCTTCCACCCGACAGCTCGGCCAGGTTGAAAATTGAAGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGATAGATATGAAAGACATGTTGGATTTAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGCCTGCAATGTGTCGGGATTTGCGACGATCGAGAGCTTCTTCAGACTCAAATCCTCTTGAAGATGTACTCATCAGCTCATGGATTCAATGTCACAAAGATTGAAGAAGAAGAAGGTGGAGGAGGAGGAGGAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACACTGTCTCAGCTTGGTCAGCAGCAGAAGTTTCTGGAAGTTCATCTTCATTTAACCATCCAACTTCTTGA 1965 47.33 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDTSATARSPSIRPVALSVEKQNIRLPPLSATNQQIKQEFWKGKGKNLKRIAEQVGFDDDDSSINSAKRKRECRDDAGDGLILSQFGSGGGSFWFHQPGGDEEGLCFLPGSEVISPPSPFLSEIADLGEGNDGESSHVKAQEGSGSGSGSSSSSESERFALRRRVTTENVSAAATAVPEIGNGSSRNPSYHHHQATGLENEREEEEGFELISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGSSPISRLIAYYTEALAVRVSRVWPQVFHIRTPREYDPTEDDAGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCILQLHKTLYDSNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLETRVVATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRDRYERHVGFKKWKKDMEQQGGLQCVGICDDRELLQTQILLKMYSSAHGFNVTKIEEEEGGGGGGAQAICLTWEDQPLYTVSAWSAAEVSGSSSSFNHPTS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20682288 20684252 + Lsi07G014150.1 Lsi07g01415 667837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01415 654 ProSiteProfiles GRAS family profile. 251 638 IPR005202 -
Lsi07g01415 654 MobiDBLite consensus disorder prediction 168 253 - -
Lsi07g01415 654 PANTHER SCARECROW-LIKE PROTEIN 28 6 642 IPR030027 -
Lsi07g01415 654 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 642 IPR005202 -
Lsi07g01415 654 MobiDBLite consensus disorder prediction 1 16 - -
Lsi07g01415 654 MobiDBLite consensus disorder prediction 218 244 - -
Lsi07g01415 654 MobiDBLite consensus disorder prediction 1 22 - -
Lsi07g01415 654 MobiDBLite consensus disorder prediction 187 206 - -
Lsi07g01415 654 Pfam GRAS domain family 260 637 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01415 Lsi-Chr7:20682288 Lsi03g00413 Lsi-Chr3:4715972 6.01E-79 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25691 PF03514 GRAS 3.30E-121 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01415 - - csv:101209060 1125.54