Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01416 ATGGCGATGCCTTCGCGTGAAGCAATTGATACTTTCATCAGCGTCACCGGAGCCTCCGAAGCCATCGCCCTTCACAGCCTCGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCTGTAAACGCACGTCAAACCTCTGTTTCTGGTGAATACGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGGTTTTTTGACCGCACCTCTGATTTTACAAGTTCTGCTCCAGTTGTGACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGTCGACCATCTGGCCAATCTGGCCATGAGCCGACAATTGAGGATATCACTGGGACTCTAGATGCCCATGGTCCAGAGGTTCATGGGACTGTAGTAATTGATGATAGGGAAGATGAAGAACCTCCAGTTACTTCTATCGCACATGCACCAGATTTAGAGCATCAGGCTGTTGTGAGTAACGTATCTCGTGACAGAAATGCTATATCTGGTGCCTTTGATAGTGATGAGTTTCAGGACGTAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGTGCAAGCTTATCCAAGTGATCCCATAACTACACACACTGATTTAAGCAACCTTAGAACTCAAGAACATCTTTCTCACTTGAATAATTTTGAATTTTCACCTGCAGCTTCATCTGTCAAGCCAGAGGAAGATTTCCCTCAGCGAGGGGAGAACATTGGAGGATCAAAAATAGAAGCTTCCAAGTTAACTGAGGTGGACGTGGAGCTCAGGAAATCTGATGATGTTATATTGGAAAAATTCAGGATGGAAACAGGAAGCACTTCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAGTTAGGCATCGGTCTAAACGCAAGTCCACTGGCTATGTTGAGCCTGCAAAGGAGGTTGAAGTAGATGTAAACCTTGCATCTAGTCCCAAGCATTCCGATACTAGTAACAATCCACAGCACAATGGGAATATCTTTCCTTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATACCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATATGCAGCCAGCTCCTCGCCCTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTTGCAGCCTTACAAGCTGACAGAGAAAAAGAACTAAAGGCTATGGAAGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAAAGAGAGGAGGAATCCCGTCAGAAATTGGATGCCGAGAAGGAACTTGAAAGACACTTGGCAGAAATAGAAGCTTCTCTTCCAAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGCTACAGTGTCTCTTGCACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGGGTTCGTTAACGTTGAATGAACTTGGACTTAACAGCAAACAAGAAGCTTTGTATCTGGAGTTGATTTAA 1791 44.33 MAMPSREAIDTFISVTGASEAIALHSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRTSDFTSSAPVVTHPRELREIPIEFRDGSRPSGQSGHEPTIEDITGTLDAHGPEVHGTVVIDDREDEEPPVTSIAHAPDLEHQAVVSNVSRDRNAISGAFDSDEFQDVNDIEEEMIRAAIEASKKDVVQAYPSDPITTHTDLSNLRTQEHLSHLNNFEFSPAASSVKPEEDFPQRGENIGGSKIEASKLTEVDVELRKSDDVILEKFRMETGSTSAQDEVEDLEEDNLVRHRSKRKSTGYVEPAKEVEVDVNLASSPKHSDTSNNPQHNGNIFPSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYMQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMEEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLHFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20685879 20691820 - Lsi07G014160.1 Lsi07g01416 667838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01416 596 Coils Coil 455 502 - -
Lsi07g01416 596 PANTHER OS09G0525600 PROTEIN 1 235 - -
Lsi07g01416 596 PANTHER FAS-ASSOCIATED PROTEIN 322 596 - -
Lsi07g01416 596 CDD UBX 520 594 - -
Lsi07g01416 596 Pfam UBA-like domain 6 47 - -
Lsi07g01416 596 Gene3D - 515 595 - -
Lsi07g01416 596 SMART ubx_3 511 595 IPR001012 GO:0005515
Lsi07g01416 596 Gene3D - 5 45 - -
Lsi07g01416 596 ProSiteProfiles UBX domain profile. 514 592 IPR001012 GO:0005515
Lsi07g01416 596 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Lsi07g01416 596 MobiDBLite consensus disorder prediction 470 494 - -
Lsi07g01416 596 Pfam UBX domain 515 594 IPR001012 GO:0005515
Lsi07g01416 596 SUPERFAMILY Ubiquitin-like 477 586 IPR029071 -
Lsi07g01416 596 PANTHER OS09G0525600 PROTEIN 322 596 - -
Lsi07g01416 596 CDD UBA_Ubx1_like 6 42 - -
Lsi07g01416 596 PANTHER FAS-ASSOCIATED PROTEIN 1 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01416 - - - csv:101208817 1023.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02007 Lsi-Chr5:27122849 Lsi07g01416 Lsi-Chr7:20685879 2.22E-13 dispersed
Lsi07g01416 Lsi-Chr7:20685879 Lsi09g00149 Lsi-Chr9:1505767 4.65E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g316 . . . . . Bpe07g00105 . . . . . . . . . . . Bhi11g00395 . . . . . . . . . . . . . . . . Cone9ag0787 Lsi07g01416 Csa05g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44