Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01425 ATGGGGAGGACTGATGATAATGTTGCTATTATAGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTACCATGGACACTACCAGCAGTGATCATAGAACCGAAGAACTCTTTCTCAGGCCTCGAGAACATACTGTATCCGAAAACGCCGTTGCAAGAGGCGGGATCTCGGGTGTCAATTCTGGTGACCGAGCAACGGAGTTTGGTATGTTCTCGGAGCAGAAATTCCGCGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATGAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAATCTCCTTACTTGACAATACCACCTGGTCTCAGTCCAACAACATTGCTAGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAGTAATCGGAGCTTGACGATGATGTCAGAGGCCAACAATAAAGGCAACAACAATCCGTTCGACGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCTTTTTTTCTCAGTGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATCGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACGTGGAGAAGGACGATGGGGGTAAGACTGTGTCGGATGATCAAAGACCCTTTGATTCTCTGTGTGGTGGCGGTGGTAGTGGTGGTGGTGAACATTCTTCGCCACTTGACGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCAATGGCTGGTGGTGGTTGCGGTGCTCCCTCAGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAAGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTCGAGCGGTCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAGCCGACGAGCAGCAATCGGATCTTCTGATTCCCATATCAATATGCAACTAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTCCCCTTTGGGAGGATTCACAAAAAGGGATTCCAACTGGAGCTCCTACTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGTCAATCAGCCTAACCCATTACATGCTCAAAATAGCAGTCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGGAGTATAACATTAGGTTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTTGACGCCTATGTAACAGAGATGAGCGGGGCCACTAGAGCAATCCGTGAGCCTAGAGTTGTCGTTCAAACTACCAGTGAAGTAGATATTCTGGACGACGGCTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCACGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATAACCACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACTGGTCAATACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACCGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATATGACCATGGCAGCAGTTGGCCAAGCCAAGTTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACGTCTGATCTTGGCTTGAACTTTTCCAATAGTTCAGCTGTGTATCAGCAAATTATGAATAGGCTTCCACTTGGACCTGAGATGTGA 2253 46.38 MGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPTMDTTSSDHRTEELFLRPREHTVSENAVARGGISGVNSGDRATEFGMFSEQKFRGGLVERIAARAGFNAPRLNTESMRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSSNRSLTMMSEANNKGNNNPFDDNSTSFAFRPSVESGSSFFLSAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYVEKDDGGKTVSDDQRPFDSLCGGGGSGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPSRRAAIGSSDSHINMQLDIPAQAGQQSAEVPLWEDSQKGIPTGAPTDWMQENLEVTSSASLGPEYVNQPNPLHAQNSSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQYSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNMTMAAVGQAKFPVMPMHPYLAQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNSSAVYQQIMNRLPLGPEM 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20782000 20787214 - Lsi07G014250.1 Lsi07g01425 667847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01425 750 SUPERFAMILY WRKY DNA-binding domain 538 606 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 MobiDBLite consensus disorder prediction 482 513 - -
Lsi07g01425 750 MobiDBLite consensus disorder prediction 602 622 - -
Lsi07g01425 750 MobiDBLite consensus disorder prediction 608 622 - -
Lsi07g01425 750 Pfam WRKY DNA -binding domain 331 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 Pfam WRKY DNA -binding domain 547 603 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 Gene3D WRKY domain 533 599 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 SMART WRKY_cls 546 605 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 SMART WRKY_cls 330 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 MobiDBLite consensus disorder prediction 253 337 - -
Lsi07g01425 750 ProSiteProfiles WRKY domain profile. 331 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 110 705 IPR044810 GO:0003700
Lsi07g01425 750 SUPERFAMILY WRKY DNA-binding domain 329 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 Gene3D WRKY domain 326 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01425 750 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 110 705 - -
Lsi07g01425 750 ProSiteProfiles WRKY domain profile. 541 606 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00386 Lsi-Chr4:3802108 Lsi07g01425 Lsi-Chr7:20782000 6.32E-83 dispersed
Lsi05g00524 Lsi-Chr5:6550848 Lsi07g01425 Lsi-Chr7:20782000 3.10E-15 dispersed
Lsi05g00525 Lsi-Chr5:6558717 Lsi07g01425 Lsi-Chr7:20782000 7.33E-07 dispersed
Lsi06g00700 Lsi-Chr6:11115700 Lsi07g01425 Lsi-Chr7:20782000 1.85E-99 dispersed
Lsi07g01425 Lsi-Chr7:20782000 Lsi11g01362 Lsi-Chr11:22221038 4.99E-16 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25694 PF03106 WRKY 3.10E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01425 K18835 - csv:101207853 1315.44