Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01432 | ATGATATGTGAAGAAAAGTCTCTTGATCCTAAGAAGGTAAAAGGGAAGATTGTAATTTGCCTTAGACGGGGCATTGCAAGAGTGGACAAAGGTTTTGTGGCTGCTGAAGCAGGTGCTGTTGGAATGATTCTTGCTAATGACGAAGAAAATGGAGATGAACTTTTAGCTGATGCTCATGTTCTTCCTGCTTCCCATATAACCTATTCTGATGGTCAATTAGTCTACCAATACATCAACTCTACCAAAATTCCAATGGCTTACATGACACACGTGAGGACAGAGTTGGGAGTCAAACCAGCACCACCTGATATAACAGCACCAGGTGTGAATATATTAGCAGCTTACTCAGAAGATACATCACCAACAGGTTCAAGTTTAGATAAACGTCGAGTGGCATTTAATGTAGATTCTGGAACTTCCATGTCATGCCCTCATATTTCTGGCATTGTTGGCCTTCTCAAAACTCTTTATCCTACATGGAGTCCTGCAGCTATTAGATCTGCAATCATGACCACAGCTGGAACCAAAGCCAATGACTTGAATCCAATACTAAGCACAAAGCAAGTGAAAGCAAATGCATTAGCATATGGAGCAGGCCATGTTCGTCCAAACGAAGCAGCAAATCCAGGCCTTGTTTATGACCTTTCCACCAAAGACTACTTGAATTACCTATGTGCTCGAGGCTACAACCAAACCCAAATCAAACTATTCTCCAATGACACTTCATTTGTTTGTTCAAAATCATTCAAAATAACAGATTTTAACTACCCGTCGATCTCGATACCGGAGCTCAAATCGGAGGCTGTCGTGAACATCACAAGGAGAGTGAAGAATGTGGGAAGTCCAGGCACGTATGTTGTTCAAGTCAATGCGCCGCCGGGGGTTTCGGTTTCGGTTGAGCCAACTAGTTTGAAGTTCACTGGAATTGATGAAGAGAAGAGTTTTAGAGTTGTGGTGAAGAGTAGTGTGCCTAATGATTTTCGTCAAAAGTATGTGTTTGGGGGACTTGAATGGTCTGATGGGATCCATCGTGTTAGAAGTCCGATTGTAGTGAGATTAGGCGGGTGA | 1068 | 42.6 | MICEEKSLDPKKVKGKIVICLRRGIARVDKGFVAAEAGAVGMILANDEENGDELLADAHVLPASHITYSDGQLVYQYINSTKIPMAYMTHVRTELGVKPAPPDITAPGVNILAAYSEDTSPTGSSLDKRRVAFNVDSGTSMSCPHISGIVGLLKTLYPTWSPAAIRSAIMTTAGTKANDLNPILSTKQVKANALAYGAGHVRPNEAANPGLVYDLSTKDYLNYLCARGYNQTQIKLFSNDTSFVCSKSFKITDFNYPSISIPELKSEAVVNITRRVKNVGSPGTYVVQVNAPPGVSVSVEPTSLKFTGIDEEKSFRVVVKSSVPNDFRQKYVFGGLEWSDGIHRVRSPIVVRLGG | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 20854633 | 20861623 | - | Lsi07G014320.1 | Lsi07g01432 | 667854 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01432 | 355 | Pfam | Fibronectin type-III domain | 253 | 351 | IPR041469 | - | |
| Lsi07g01432 | 355 | SUPERFAMILY | Subtilisin-like | 101 | 265 | IPR036852 | GO:0004252|GO:0006508 | |
| Lsi07g01432 | 355 | Gene3D | - | 1 | 93 | - | - | |
| Lsi07g01432 | 355 | Gene3D | - | 224 | 353 | - | - | |
| Lsi07g01432 | 355 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 138 | 148 | IPR023828 | - | |
| Lsi07g01432 | 355 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 1 | 207 | - | - | |
| Lsi07g01432 | 355 | SUPERFAMILY | PA domain | 10 | 87 | IPR046450 | - | |
| Lsi07g01432 | 355 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 2 | 101 | IPR045051 | - | |
| Lsi07g01432 | 355 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 102 | 354 | IPR045051 | - | |
| Lsi07g01432 | 355 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 102 | 354 | - | - | |
| Lsi07g01432 | 355 | Pfam | Subtilase family | 99 | 199 | IPR000209 | GO:0006508|GO:0008236 | |
| Lsi07g01432 | 355 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 2 | 101 | - | - | |
| Lsi07g01432 | 355 | Pfam | PA domain | 11 | 72 | IPR003137 | - | |
| Lsi07g01432 | 355 | CDD | PA_subtilisin_like | 3 | 86 | - | - | |
| Lsi07g01432 | 355 | Gene3D | Peptidase S8/S53 domain | 102 | 220 | IPR036852 | GO:0004252|GO:0006508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00203 | Lsi-Chr1:1900585 | Lsi07g01432 | Lsi-Chr7:20854633 | 3.48E-69 | dispersed | |
| Lsi07g01432 | Lsi-Chr7:20854633 | Lsi07g01438 | Lsi-Chr7:20932916 | 0 | dispersed | |
| Lsi07g01431 | Lsi-Chr7:20842733 | Lsi07g01432 | Lsi-Chr7:20854633 | 1.51E-151 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01432 | - | - | csv:105434448 | 575.859 |