Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01450 | ATGCATTTATATCCTGTTTTCTCTTGGTGTTCAATTTTCTCTGCTGACCTGAAGAATGAATCTGCAGCTGGTGGTCTTCTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATGTTTGCACTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACGTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACTCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGAAACATCTTTATTCTTCCATTTATGAGGAAGAAACTCAGAGTGAAGAAAGCTCAGATGAAGATGAAACTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTAGCAATTTTGACCGCCTGGATCTCTGTTCTATCAAAATACTTGGTCGATGCTATTGAAATTGCATCTGAATCATTGAAAATCCCGGTGTCGTTTATTAGTGTTATACTGCTTCCAATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTCGGGAACACGAGGGCTCGTAGTCCTTATTTCTTCTACTTGCTGTACTCTAAAAATTCTTCTTTTATTGTCCTTCTGTCACTCTGCCATTGTAAAAAGGGCTGTGATGTTTCTCTGTATTTGATGTCCTTCAACTGTATTATTGCATTACATTGTCTTGTTTCCTTCTCAACTCATGACTTAAGTCATCTTGTACGGAAAATTAATGCAGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTTCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATAGTCGTAGCTTTCTTGCTCCAGGAACTTCAAATTACTTCAAGGGACTAATGCTTATCCTTTGTTATCTGATAGTTGCAGCTAGTTTTTTCGTGCACGTCGATCCTTCTTTACCCGATAATAAACTGGGGAGTTTGAAAGTATAG | 1227 | 39.85 | MHLYPVFSWCSIFSADLKNESAAGGLLNATFGNATELIISMFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQKHLYSSIYEEETQSEESSDEDETPEISKWESVIWLAILTAWISVLSKYLVDAIEIASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGNTRARSPYFFYLLYSKNSSFIVLLSLCHCKKGCDVSLYLMSFNCIIALHCLVSFSTHDLSHLVRKINADSFLCGNWVDYGTTNGLKLSTLRDGNTFYNCNSRSFLAPGTSNYFKGLMLILCYLIVAASFFVHVDPSLPDNKLGSLKV | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 21054230 | 21056792 | + | Lsi07G014500.1 | Lsi07g01450 | 667872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01450 | 408 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 365 | 397 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Lsi07g01450 | 408 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER 2 | 365 | 397 | - | - | |
Lsi07g01450 | 408 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER 2 | 20 | 261 | - | - | |
Lsi07g01450 | 408 | TIGRFAM | cax: calcium/proton exchanger | 21 | 260 | IPR004798 | GO:0006816|GO:0015369 | |
Lsi07g01450 | 408 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 20 | 261 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Lsi07g01450 | 408 | Pfam | Sodium/calcium exchanger protein | 19 | 147 | IPR004837 | GO:0016021|GO:0055085 | |
Lsi07g01450 | 408 | Pfam | Sodium/calcium exchanger protein | 181 | 387 | IPR004837 | GO:0016021|GO:0055085 | |
Lsi07g01450 | 408 | Gene3D | - | 19 | 162 | IPR044880 | - | |
Lsi07g01450 | 408 | Gene3D | - | 168 | 328 | IPR044880 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01450 | Lsi-Chr7:21054230 | Lsi10g00028 | Lsi-Chr10:461280 | 2.30E-123 | dispersed | |
Lsi07g01450 | Lsi-Chr7:21054230 | Lsi03g02209 | Lsi-Chr3:33099706 | 1.37E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01450 | K07300 | - | csv:101205761 | 412.149 |