Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01450 ATGCATTTATATCCTGTTTTCTCTTGGTGTTCAATTTTCTCTGCTGACCTGAAGAATGAATCTGCAGCTGGTGGTCTTCTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATGTTTGCACTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACGTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACTCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGAAACATCTTTATTCTTCCATTTATGAGGAAGAAACTCAGAGTGAAGAAAGCTCAGATGAAGATGAAACTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTAGCAATTTTGACCGCCTGGATCTCTGTTCTATCAAAATACTTGGTCGATGCTATTGAAATTGCATCTGAATCATTGAAAATCCCGGTGTCGTTTATTAGTGTTATACTGCTTCCAATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTCGGGAACACGAGGGCTCGTAGTCCTTATTTCTTCTACTTGCTGTACTCTAAAAATTCTTCTTTTATTGTCCTTCTGTCACTCTGCCATTGTAAAAAGGGCTGTGATGTTTCTCTGTATTTGATGTCCTTCAACTGTATTATTGCATTACATTGTCTTGTTTCCTTCTCAACTCATGACTTAAGTCATCTTGTACGGAAAATTAATGCAGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTTCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATAGTCGTAGCTTTCTTGCTCCAGGAACTTCAAATTACTTCAAGGGACTAATGCTTATCCTTTGTTATCTGATAGTTGCAGCTAGTTTTTTCGTGCACGTCGATCCTTCTTTACCCGATAATAAACTGGGGAGTTTGAAAGTATAG 1227 39.85 MHLYPVFSWCSIFSADLKNESAAGGLLNATFGNATELIISMFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQKHLYSSIYEEETQSEESSDEDETPEISKWESVIWLAILTAWISVLSKYLVDAIEIASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGNTRARSPYFFYLLYSKNSSFIVLLSLCHCKKGCDVSLYLMSFNCIIALHCLVSFSTHDLSHLVRKINADSFLCGNWVDYGTTNGLKLSTLRDGNTFYNCNSRSFLAPGTSNYFKGLMLILCYLIVAASFFVHVDPSLPDNKLGSLKV 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21054230 21056792 + Lsi07G014500.1 Lsi07g01450 667872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01450 408 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 365 397 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi07g01450 408 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 365 397 - -
Lsi07g01450 408 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 20 261 - -
Lsi07g01450 408 TIGRFAM cax: calcium/proton exchanger 21 260 IPR004798 GO:0006816|GO:0015369
Lsi07g01450 408 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 261 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi07g01450 408 Pfam Sodium/calcium exchanger protein 19 147 IPR004837 GO:0016021|GO:0055085
Lsi07g01450 408 Pfam Sodium/calcium exchanger protein 181 387 IPR004837 GO:0016021|GO:0055085
Lsi07g01450 408 Gene3D - 19 162 IPR044880 -
Lsi07g01450 408 Gene3D - 168 328 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01450 Lsi-Chr7:21054230 Lsi10g00028 Lsi-Chr10:461280 2.30E-123 dispersed
Lsi07g01450 Lsi-Chr7:21054230 Lsi03g02209 Lsi-Chr3:33099706 1.37E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01450 K07300 - csv:101205761 412.149