Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01454 | ATGGCATCCACGGCGGAGGAAACAGCCACCACTTTCTCCTCCAACGCTGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAATTAGTTACCTTATCAGTGTTGCCGATGACACTCCAAGCAGCGTTCGAGCTCGGTGTGTTCGAGATCTTGGCGAAGGCTGGGGATGGGGCCAAACTCTCTTCCGTAGAGATAGCGACTAAGATAACTACGACAAACCCAGATGCAGCGTCGATGATTGATCGGATGTTGAGACTTCTGGCGAGCCACTCAGTGGTGGGGTGCTCTATGGGCTTTGATGAAGATGAGAAAATGCGCAGAGTGTATAGCCTTACGCCGGTTTCTAAGTGTTATGTTTGTAATGAAGATGGTGTCTCGTTGGGTCCAATTTTGTCGTTGATTCAAGATCAAGTCTTTCTCTGTAGCTGGAGTGAGCTAAAGAATGCCGTTATTGAGGGAGGAGTTCCTTTCAATAGGGCTCATGAGGGAGTTCATGCTTTTGATTACCCTGGCTTGGATCCAAGATTTAACCAAGTTTTCAACACTGCAATGATAAATCACACCACTATGGTCATAAAAAAAATTGTTAACTCCTACAAAGGCTTTGCAAACATCAAGCAACTAGTTGATGTTGGTGGCGGACTTGGGGTCACCCTTCAAATCATCACTTCTAAATACCCTTCCATCAAAGGCATCAACTTCGACTTACCTCATGTTATCCACAATGCCCCTTCCTATCCTGGTGTAGAACATGTGGGAGGAGACATGTTTAAGAAAGTTCCAAATGGAAATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGATGATCATTGTGTAAAGTTGTTGAAAAATTGCTACACTGCAATTCCAAACGATGGAAAGGAAATCATAGTAGACTCGGTGGTTCCAACAGTACCTGAAACAACAAATGTAACAAAATCCATTGCCCAATTCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAGCGAACTCAGGATGAATTCAAGGCTCTCGCAACCAAAGCTAAATTTAAACGTGTCATATTCCAGTGTTTTGTATCTAATCTTTGGGTTATAGAGTTTCTTAAAAATTAA | 1110 | 43.24 | MASTAEETATTFSSNAAAQEQQHYAYAMQLVTLSVLPMTLQAAFELGVFEILAKAGDGAKLSSVEIATKITTTNPDAASMIDRMLRLLASHSVVGCSMGFDEDEKMRRVYSLTPVSKCYVCNEDGVSLGPILSLIQDQVFLCSWSELKNAVIEGGVPFNRAHEGVHAFDYPGLDPRFNQVFNTAMINHTTMVIKKIVNSYKGFANIKQLVDVGGGLGVTLQIITSKYPSIKGINFDLPHVIHNAPSYPGVEHVGGDMFKKVPNGNAVFMKWILHDWSDDHCVKLLKNCYTAIPNDGKEIIVDSVVPTVPETTNVTKSIAQFDVLMMTQNPGGKERTQDEFKALATKAKFKRVIFQCFVSNLWVIEFLKN | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 21149331 | 21155896 | - | Lsi07G014540.1 | Lsi07g01454 | 667876 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01454 | 369 | PIRSF | O-mtase | 4 | 368 | IPR016461 | GO:0008168 | |
| Lsi07g01454 | 369 | Pfam | O-methyltransferase domain | 144 | 349 | IPR001077 | GO:0008171 | |
| Lsi07g01454 | 369 | PANTHER | CAFFEIC ACID O-METHYLTRANSFERASE | 20 | 368 | - | - | |
| Lsi07g01454 | 369 | SUPERFAMILY | Winged helix DNA-binding domain | 19 | 121 | IPR036390 | - | |
| Lsi07g01454 | 369 | Pfam | Dimerisation domain | 38 | 89 | IPR012967 | GO:0046983 | |
| Lsi07g01454 | 369 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 125 | 366 | IPR029063 | - | |
| Lsi07g01454 | 369 | PANTHER | O-METHYLTRANSFERASE | 20 | 368 | IPR016461 | GO:0008168 | |
| Lsi07g01454 | 369 | Gene3D | - | 3 | 118 | IPR036388 | - | |
| Lsi07g01454 | 369 | Gene3D | Vaccinia Virus protein VP39 | 121 | 368 | IPR029063 | - | |
| Lsi07g01454 | 369 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 28 | 368 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g01454 | Lsi-Chr7:21149331 | Lsi10g00878 | Lsi-Chr10:13057073 | 1.01E-61 | dispersed | |
| Lsi07g01453 | Lsi-Chr7:21105962 | Lsi07g01454 | Lsi-Chr7:21149331 | 0 | tandem | |
| Lsi07g01454 | Lsi-Chr7:21149331 | Lsi07g01455 | Lsi-Chr7:21165655 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01454 | K13066 | - | csv:101214916 | 568.926 |