Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01472 ATGGGGAAGAACGAATTTCTGACCCCTAAAGCAATCGCGAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAAAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCGAAAATCCCCATCGTATTGTTGAAGGCTACTCTGAAGAGTTTGAGAGTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTTACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCTGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTTTCTGCTGAGCCTTTACAGGCTGAACAAACGAGAGAGTTGAAATTGGAGAGTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCATCAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGATATATGAGACTGCCAAGGGGAAACCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTCTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTACTGGCTTTGTGAGGGAATAGTTGTAAAGATTATGAGCAAGGATTTGGCTGAGAAGGGGTACTATAAACAGAAGGGAGTTGTGCGAAAAGTGATCGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGCGAGTTGATCAAGAAGAATTGGAAACAGTGATACCACAAATTGGTGGCTTAGTAAGGATAGTAAACGGGGCATATCGTGGATCAAATGCTAGGTTGTTAGGCGTTGACACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAAGGGTGTGTATGATGGCAGAATGCTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAA 1188 42.51 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGENPHRIVEGYSEEFESSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSAEPLQAEQTRELKLESGVKLGFALGTSSKLKEKGESSRVVFDEDEIYETAKGKPKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDYWLCEGIVVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRMLKAVEYEDICKLAS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21455150 21456337 + Lsi07G014720.1 Lsi07g01472 667894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01472 395 Coils Coil 154 183 - -
Lsi07g01472 395 CDD KOW_KIN17 340 393 IPR041995 -
Lsi07g01472 395 SMART Kin17_mid_2 52 178 IPR019447 -
Lsi07g01472 395 Gene3D - 60 160 IPR038254 -
Lsi07g01472 395 Gene3D - 284 337 - -
Lsi07g01472 395 Coils Coil 257 277 - -
Lsi07g01472 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Lsi07g01472 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Lsi07g01472 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 -
Lsi07g01472 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Lsi07g01472 395 Gene3D - 338 394 IPR014722 -
Lsi07g01472 395 PANTHER BNAA05G13760D PROTEIN 1 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00037 Lsi-Chr3:680923 Lsi07g01472 Lsi-Chr7:21455150 0 dispersed
Lsi05g01151 Lsi-Chr5:19372067 Lsi07g01472 Lsi-Chr7:21455150 6.18E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01472 K13102 - csv:101216499 735.717