Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01483 ATGGAGAATTATCAGATGTTTTTCCCTTGCTCCGGCGGCGGCGGCGGCGACGGCGGTGGAGGACTGTCGGTGTATCATCATGCCGACATGTCATCCGGCAGCGGGTCTGATATGTTCGGGAATTTTCACGGCGGCGACATGGAGGTAAGTGGGTTTGTAGGGATGAAGACAGAGGTGGACGCGGCGGCGGCGGTGGAAGCGAACGGCGGCGGGAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATATGGTCAAAAAGCTGTTAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACACATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACCAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 528 48.11 MENYQMFFPCSGGGGGDGGGGLSVYHHADMSSGSGSDMFGNFHGGDMEVSGFVGMKTEVDAAAAVEANGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21620276 21623084 - Lsi07G014830.1 Lsi07g01483 667905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01483 175 ProSiteProfiles WRKY domain profile. 90 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01483 175 Gene3D WRKY domain 72 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01483 175 SMART WRKY_cls 95 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01483 175 SUPERFAMILY WRKY DNA-binding domain 87 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g01483 175 Pfam WRKY DNA -binding domain 96 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g01483 175 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 46 170 - -
Lsi07g01483 175 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 170 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00408 Lsi-Chr3:4656714 Lsi07g01483 Lsi-Chr7:21620276 4.80E-55 dispersed
Lsi07g00019 Lsi-Chr7:255094 Lsi07g01483 Lsi-Chr7:21620276 7.75E-49 dispersed
Lsi07g00905 Lsi-Chr7:10414641 Lsi07g01483 Lsi-Chr7:21620276 4.96E-38 dispersed
Lsi07g01483 Lsi-Chr7:21620276 Lsi08g00885 Lsi-Chr8:17234479 1.06E-37 dispersed
Lsi07g01483 Lsi-Chr7:21620276 Lsi11g01628 Lsi-Chr11:24630520 8.58E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25698 PF03106 WRKY 3.50E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01483 - - csv:101219349 271.166