Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01491 ATGCATCCTAAAACCTCATCGACAACAAAGCAGCCCCAAGAAGTGGTAGCCAACTTTGTGAAGAACCGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAGGAATCAATCATGGGTGAAAATAAAGCAAGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAAGGGAAAAAACAGTTAGCCCCAAAAAGAAGCTCGAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCGGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCATCGATAATCGCAGCCACAGGCACCGGAACTATTCCTGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTCTCGGCCGGATTGCATCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTAGCCGCCACACCCACAGGCCTTTGGCCCTCATCTGTCACTGCCTTTGGTTTTCACTCTTCAACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGGTTCCCACCTTTTGACTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCTCAAGATGGCCATATTGGGGTTATAAATCCGCAGGCACTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACAACAACACCAGCAGCCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 948 47.89 MHPKTSSTTKQPQEVVANFVKNREEEEEEEEEEAEEEEESIMGENKASEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPTGLWPSSVTAFGFHSSTASAAAAAAAAAQSATNLANETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQQHHHQQQHQQPPAKDDSQDSG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21755091 21756038 + Lsi07G014910.1 Lsi07g01491 667913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01491 315 MobiDBLite consensus disorder prediction 24 40 - -
Lsi07g01491 315 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 44 314 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 1 85 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 1 16 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 288 315 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 53 85 - -
Lsi07g01491 315 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Lsi07g01491 315 Coils Coil 16 47 - -
Lsi07g01491 315 Pfam TCP family transcription factor 73 176 IPR017887 -
Lsi07g01491 315 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 314 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01491 Lsi-Chr7:21755091 Lsi09g01743 Lsi-Chr9:26074586 2.95E-72 dispersed
Lsi07g01491 Lsi-Chr7:21755091 Lsi04g00434 Lsi-Chr4:4137810 1.29E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25699 PF03634 TCP 3.70E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01491 - - cpep:111791513 478.018