Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01491 ATGCATCCTAAAACCTCATCGACAACAAAGCAGCCCCAAGAAGTGGTAGCCAACTTTGTGAAGAACCGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAGGAATCAATCATGGGTGAAAATAAAGCAAGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAAGGGAAAAAACAGTTAGCCCCAAAAAGAAGCTCGAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCGGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCATCGATAATCGCAGCCACAGGCACCGGAACTATTCCTGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTCTCGGCCGGATTGCATCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTAGCCGCCACACCCACAGGCCTTTGGCCCTCATCTGTCACTGCCTTTGGTTTTCACTCTTCAACTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGGTTCCCACCTTTTGACTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCTCAAGATGGCCATATTGGGGTTATAAATCCGCAGGCACTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACAACAACACCAGCAGCCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 948 47.89 MHPKTSSTTKQPQEVVANFVKNREEEEEEEEEEAEEEEESIMGENKASEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPTGLWPSSVTAFGFHSSTASAAAAAAAAAQSATNLANETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQQHHHQQQHQQPPAKDDSQDSG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21755091 21756038 + Lsi07G014910.1 Lsi07g01491 667913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01491 315 MobiDBLite consensus disorder prediction 24 40 - -
Lsi07g01491 315 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 44 314 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 1 85 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 1 16 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 288 315 - -
Lsi07g01491 315 MobiDBLite consensus disorder prediction 53 85 - -
Lsi07g01491 315 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Lsi07g01491 315 Coils Coil 16 47 - -
Lsi07g01491 315 Pfam TCP family transcription factor 73 176 IPR017887 -
Lsi07g01491 315 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 314 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01491 - - - cpep:111791513 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01491 Lsi-Chr7:21755091 Lsi09g01743 Lsi-Chr9:26074586 2.95E-72 dispersed
Lsi07g01491 Lsi-Chr7:21755091 Lsi04g00434 Lsi-Chr4:4137810 1.29E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25699 PF03634 TCP 3.70E-31 No_clan Lsi TF