Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00008 | ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAGGCCAATGAATATTTAGAGAAAACCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTGGGGGAAACCTTAAATCTTCTAGGAGGAGTCAGAAGTGGACACGAAATAATGAGATTAAGCTAAATGAAGTTATGTTTCCTCCTCCATCCTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATATAGTAAGAGGTCAATGGTCACAAGAACAACTGCTTCAAAGAAGTTTAGGTCCGAGGAAGGGATCAACAAGAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGACGATGAAGACCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCAATGAAGGTAATCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAGGCCGCTAAAATGGGCAAAGAGGTTCAGTTGCCAAAACCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCAGGTGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTAAATGGTAACCATCGGTGTAAAGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGCAAGGCGTGAGACCTCCAATTAGGCATGTATTCTCGAGGAAGGGTAAAAGAGGAATTGCACTCAAGATGGTTAGAGGAGCAATAGGAAGACTGCATATGATAGTATTGCGTATATGCAACAAGGGTCCTCCGGTGGAAGAACTGGTGGTCAAGAAGAGAGCTGTGGGGATGGAATCGCTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGGTTAGCTGAAATTGATAAAGAAGAGGATAGTGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGAAGGTGATGTGGAATATGAAGAAGAGAGAGCACAAATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAGTATGA | 1299 | 41.65 | MSRRSTRLVEKANEYLEKTTNSETAKSSRTKRYGVSGGNLKSSRRSQKWTRNNEIKLNEVMFPPPSFEQLEGKKRKTYSKRSMVTRTTASKKFRSEEGINKKGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCEAAKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNGNHRCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEQGVRPPIRHVFSRKGKRGIALKMVRGAIGRLHMIVLRICNKGPPVEELVVKKRAVGMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDSEAVDSDKEWKLDQNADSDSEGDVEYEEERAQILQSRNYSRSTHELAAV | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 225596 | 230068 | + | Lsi08G000080.1 | Lsi08g00008 | 667934 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00008 | 432 | MobiDBLite | consensus disorder prediction | 383 | 412 | - | - | |
| Lsi08g00008 | 432 | ProSitePatterns | Zinc finger PHD-type signature. | 149 | 192 | IPR019786 | - | |
| Lsi08g00008 | 432 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 213 | IPR013083 | - | |
| Lsi08g00008 | 432 | Pfam | PHD-finger | 149 | 194 | IPR019787 | - | |
| Lsi08g00008 | 432 | ProSiteProfiles | BAH domain profile. | 205 | 376 | IPR001025 | GO:0003682 | |
| Lsi08g00008 | 432 | Gene3D | - | 327 | 430 | IPR043151 | - | |
| Lsi08g00008 | 432 | SUPERFAMILY | FYVE/PHD zinc finger | 135 | 198 | IPR011011 | - | |
| Lsi08g00008 | 432 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Lsi08g00008 | 432 | MobiDBLite | consensus disorder prediction | 383 | 401 | - | - | |
| Lsi08g00008 | 432 | Gene3D | - | 86 | 279 | IPR043151 | - | |
| Lsi08g00008 | 432 | ProSiteProfiles | Zinc finger PHD-type profile. | 146 | 195 | IPR019787 | - | |
| Lsi08g00008 | 432 | MobiDBLite | consensus disorder prediction | 18 | 46 | - | - | |
| Lsi08g00008 | 432 | PANTHER | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 86 | 424 | IPR020793 | - | |
| Lsi08g00008 | 432 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lsi08g00008 | 432 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 86 | 424 | - | - | |
| Lsi08g00008 | 432 | SMART | PHD_3 | 148 | 193 | IPR001965 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g00008 | Lsi-Chr8:225596 | Lsi01g00030 | Lsi-Chr1:336558 | 1.11E-06 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25702 | PF00628 | PHD | 1.00E-08 | CL0390 | Lsi | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00008 | K02603 | - | csv:101214082 | 639.032 |