Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00009 ATGGAAAGTGCTTTATGCGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAACTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGATCTATTAGAGCTTCATCCAGGATCTATCTACCATCCGGACAGTCCCTTGGAGCATGCAATAGTGCTTTATCAAACCTTTAGAGCACAGTGA 507 41.62 MESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIDLLELHPGSIYHPDSPLEHAIVLYQTFRAQ 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 230330 232151 + Lsi08G000090.1 Lsi08g00009 667935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00009 168 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 2 138 IPR020793 -
Lsi08g00009 168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 136 IPR027417 -
Lsi08g00009 168 SMART AAA_5 11 165 IPR003593 -
Lsi08g00009 168 Gene3D - 1 140 IPR027417 -
Lsi08g00009 168 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 2 138 - -
Lsi08g00009 168 Pfam ATPase family associated with various cellular activities (AAA) 15 138 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00009 Lsi-Chr8:230330 Lsi10g01424 Lsi-Chr10:18342365 9.33E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00009 K02603 - csv:116404379 276.944