Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00018 | ATGCAATCGACAACTGGTGGTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGCCTCGCTCGCTTCCGTTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCCCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCAACTCCTCCGACCTCGACTCTTCCGCGGATCAGCCCTTGTTCGACCCCAATCCCTCCCCCGCCTTCCACCGGCAGAATAGCTCTCCCGCTGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTCCCTATGCTCTCAATTCCTCCACCACTCTCGACATCTCTCCTACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCAAACATGGATAAGGTAAACTATGTCATGATTGATCATTATGAATGA | 627 | 54.39 | MQSTTGGGATGSRSSGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAANSSDLDSSADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTPYALNSSTTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKVNYVMIDHYE | 208 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 435166 | 436267 | + | Lsi08G000180.1 | Lsi08g00018 | 667944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00018 | 208 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 11 | 198 | - | - | |
| Lsi08g00018 | 208 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 200 | IPR036638 | GO:0046983 | |
| Lsi08g00018 | 208 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 208 | IPR011598 | GO:0046983 | |
| Lsi08g00018 | 208 | MobiDBLite | consensus disorder prediction | 113 | 137 | - | - | |
| Lsi08g00018 | 208 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 11 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02593 | Lsi-Chr2:32359372 | Lsi08g00018 | Lsi-Chr8:435166 | 5.25E-18 | dispersed | |
| Lsi08g00018 | Lsi-Chr8:435166 | Lsi11g00401 | Lsi-Chr11:4157224 | 2.57E-12 | dispersed | |
| Lsi08g00018 | Lsi-Chr8:435166 | Lsi06g00513 | Lsi-Chr6:6183825 | 1.37E-23 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00018 | - | - | csv:101209773 | 292.352 |