Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00018 ATGCAATCGACAACTGGTGGTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGCCTCGCTCGCTTCCGTTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCCCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCAACTCCTCCGACCTCGACTCTTCCGCGGATCAGCCCTTGTTCGACCCCAATCCCTCCCCCGCCTTCCACCGGCAGAATAGCTCTCCCGCTGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTCCCTATGCTCTCAATTCCTCCACCACTCTCGACATCTCTCCTACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCAAACATGGATAAGGTAAACTATGTCATGATTGATCATTATGAATGA 627 54.39 MQSTTGGGATGSRSSGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAANSSDLDSSADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTPYALNSSTTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKVNYVMIDHYE 208
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 435166 436267 + Lsi08G000180.1 Lsi08g00018 667944
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00018 208 PANTHER TRANSCRIPTION FACTOR BHLH80 11 198 - -
Lsi08g00018 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 200 IPR036638 GO:0046983
Lsi08g00018 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 208 IPR011598 GO:0046983
Lsi08g00018 208 MobiDBLite consensus disorder prediction 113 137 - -
Lsi08g00018 208 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 198 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02593 Lsi-Chr2:32359372 Lsi08g00018 Lsi-Chr8:435166 5.25E-18 dispersed
Lsi08g00018 Lsi-Chr8:435166 Lsi11g00401 Lsi-Chr11:4157224 2.57E-12 dispersed
Lsi08g00018 Lsi-Chr8:435166 Lsi06g00513 Lsi-Chr6:6183825 1.37E-23 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00018 - - csv:101209773 292.352