Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00026 ATGCATGGCTACAGCCGCTTGAACACTTCGCGTTCCAGTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGGCAACTAAGGAGTCGGAGTGGCAGTGATAGTGGTAGCGGAACCGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGTAGCATTATGGAGAAATTGGTTTTTCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGGAGTCCTCAGGTTTTTGAGAAGCTCTGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACGCATGCGCAAATAGCAACCCCCTCTGTCCTTTGCATTGTGGTTTTGGAAGTTCAAATTCTTTGTTTATGTTCATTGTTGTCAACTGCATGGAATTCGAGAGTGCACCATGTTTGGAAACCATGCATCAGTAGAAGCACTATGACAGAGTTACCAAAGTCAAATGGTTTTCTTATCATTGAAGCCAATGGTGGGTTAAATCAGCAAAGGTTGTCGATATGTGATGCAGTTGCAGTAGCTGGACTACTGAATGCTTCTCTTGTCATTCCAATATTTCATTTGAATAGTGTTTGGCGAGATTCAAGCAAATTTGGTGATATTTTCGATGAAGAGTTTTTCATACAAGCATTAAGCAAGCATGTTAATATTGTGAGAGAGCTCCCAGCTGATGTACTGCAGCGGTATGATAATAATATAAGCAGTATTGTGAACTTAAGAGTAAAAGCATGGTCAAGCCCAATGTACTATTTGCATAAAGTCCTTCCGAAGCTCTTGCAATTGAGGGCAGTAAGGATTGCCCCATTCTCCAACCGGTTGGCTCATGGAGTTCCTTCAGATGTTCAAGCACTTAGATGTTTAGCCAATTTTGAAGCTTTGAGGTTTGCAGAATCTATAAGAATTCTGGCAGATCTCATGGTTGATCGAATGATCAGAAAAAGCTCTCAGAGTGGAGGAAAATATATTTCTGTGCATCTTCGTTTTGAAGAGGATATGGTTGCATTTTCGTGCTGTGAATATGATGGTGGAGAAGAAGAGAAGCATGAGATGGACCTGGCTAGAGAAAGGAGCTGGAGGGGGAAATTCAGAAGAAGGGGGAGAGTGATAAGGCCTGGTGTTAATAGGGTGGATGGAAAATGTCCTTTAACCCCACTGGAGGTCGGAATGATGCTTAGAGGAATGGGTTTTGATAATACAACTTCCATATATGTTGCAGCAGGAAAAATTTATAAAGCAGAAAAGTATATGGCTCCACTTAGGCAGATGTTTCCACGTTTAGAAACAAAAGATACTATAGCTACTAAGGAAGAACTTGCTCCATTCAAGGGTCACTCTTCTAGATTGGCTGCTCTTGATTACACAGTATGTCTTCATAGTGAAGTCTTTGTCACAACTCAAGGTGGGAATTTCCCCCACTTTTTGACGGGTCACAGGCGCTATATTTTTGCCGGACATGCAAAGACAGTCAAACCAGATAAGAGGAAACTAGCGTTAATTTTTGATGATCCTAATATACGATGGCAAAACTTCACGCAACAAATGCAAGACATGCTTCGCCACAATGATCAAAAGGGAATGGAAATGAAAAAGTCCAGTGGATCCTTGTATACGTTTCCCATGCCAGATTGCATGTGCAAAGTACCAAACACGAAGAACCATGATTAA 1791 42.6 MHGYSRLNTSRSSVSQSPPASPRHRQLRSRSGSDSGSGTGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHAQIATPSVLCIVVLEVQILCLCSLLSTAWNSRVHHVWKPCISRSTMTELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNASLVIPIFHLNSVWRDSSKFGDIFDEEFFIQALSKHVNIVRELPADVLQRYDNNISSIVNLRVKAWSSPMYYLHKVLPKLLQLRAVRIAPFSNRLAHGVPSDVQALRCLANFEALRFAESIRILADLMVDRMIRKSSQSGGKYISVHLRFEEDMVAFSCCEYDGGEEEKHEMDLARERSWRGKFRRRGRVIRPGVNRVDGKCPLTPLEVGMMLRGMGFDNTTSIYVAAGKIYKAEKYMAPLRQMFPRLETKDTIATKEELAPFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLTGHRRYIFAGHAKTVKPDKRKLALIFDDPNIRWQNFTQQMQDMLRHNDQKGMEMKKSSGSLYTFPMPDCMCKVPNTKNHD 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 676363 691024 + Lsi08G000260.1 Lsi08g00026 667952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00026 596 PANTHER - 14 595 IPR024709 -
Lsi08g00026 596 PIRSF UCP009360 33 591 IPR024709 -
Lsi08g00026 596 MobiDBLite consensus disorder prediction 1 46 - -
Lsi08g00026 596 PANTHER O-FUCOSYLTRANSFERASE 9 14 595 - -
Lsi08g00026 596 CDD O-FucT_plant 193 530 IPR024709 -
Lsi08g00026 596 Pfam GDP-fucose protein O-fucosyltransferase 193 522 IPR019378 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00026 - - - csv:101208796 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00811 Lsi-Chr1:6430292 Lsi08g00026 Lsi-Chr8:676363 1.67E-90 dispersed
Lsi04g00604 Lsi-Chr4:5568864 Lsi08g00026 Lsi-Chr8:676363 5.92E-105 dispersed
Lsi04g02374 Lsi-Chr4:30862758 Lsi08g00026 Lsi-Chr8:676363 0 dispersed
Lsi08g00026 Lsi-Chr8:676363 Lsi09g00661 Lsi-Chr9:7383415 8.96E-11 dispersed
Lsi08g00026 Lsi-Chr8:676363 Lsi08g00985 Lsi-Chr8:18296828 4.97E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010910 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00026 Lsi_Chr08 FPKM 17.109426 19.644215 34.909351 35.228889 31.920143 30.291199 30.36347 50.755047 52.912651 51.6422