Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00030 ATGGGTAATAGCCTAATTTGCAAGTCAAAGAAGGATGTCAAAGAGATTGGATCTAGAAGCAAGAGAATGGGTCGCTCTCAGAGGAAGTTGCAGAGTGAGGAAGAGTATTTGCAGAAGCAGGCTCTCTCCTTGGCTCTTCAACAGCTTCAATTGTCTCAGAGGTTTGATGGATCCACTTCGAAAAGAATTGGGTCGACAAGCTCTCAAAGACGCAATCTATCCGATCCATTCTCTAATGGGAAGCAGGGTCAGGGCAAGAAAGATTCAAAGTTGTGTGGAGCAGATGTGACTTCTGGTGAAGCAAATTTGCAGGCACCAGATTTTCTGGAAAATCTGAAAGAAAAAAAATTTGTTTTAATTCATGGTGAAGGATTTGGAGCTTGGTGCTGGTACAAAACAATTTCTTTACTGGAGGAAGTCGGATTGTCTCCTATAGCCATTGATCTCAAAGGTTCTGGTATTGATCTAACAGATACAAACAGGGTGAATACTCTAGCAGAGTATTCAAAGCCATTGACTGATTACCTACAAGATCTTCCTGATGATGAAAAGACACCACAGAATCACTGCTCATTCTGCAAATCAAACTGCTTAGCAACTCTTGCAAAATTTTGCAGTGCCATTTATGAAAACTTCCATGGCCATTTGGTTGCGTATATGTTAACAATAGTTGGTATTTTGAAGGTTGTTCTAGTTGGCCACAGTAGTGGAGGTGCTTGTCTCTCTTATGCATTGGAACATTTCTCAAATAAAATATCGAAAGCAATTTACGTCTGTGCAACGATGGTGGCTACTGGCCAGAGACCTTTTGATGTATTCATGGAAGAGCTTGGATCTGAAGAGATTTTTATGAAAGATTCGAAGTCTTTGATCTATGGGAATGGAAAAGATAAACCGCCTACCGGATTCATGTTCGAGAAAGAGCAAATCAAAGGGTTGTACTTCAATCAATCTCCTACCAAGGTCGCTTTAAAGGTTATTATCCCATTCATAACTTCCGGAAGATATTCTGTGTTCGATGTTGAAAATGAATGTGAAACATTATCAAAGCTAGGTGATGTTCTTGAACTCTCCGAGTTTGGGTTAGAATCCGTTCCTGTATACGATGTTGCTTTGGCAATGGTTTCAATGAGACCCTTCCCACTGGGTCCAGTCATGGAGAAACTCTCACTATCCCCTGAAAACTACGGAACCGGGCGGCGATTCTTCATTCAAACGCTCGATGATCATGCACTCTCACCTGATGTTCAAGAGAAGTTGGTCAGGGAAAACCCACCTGAAAGAGTTTTCAAGATAAAAGGCAGTGATCATTGTCCATTTTTCTCTAAGCCACAATCACTCCACAAGATCCTTCTGGAAATTGCTCAAATACCATAA 1377 41.1 MGNSLICKSKKDVKEIGSRSKRMGRSQRKLQSEEEYLQKQALSLALQQLQLSQRFDGSTSKRIGSTSSQRRNLSDPFSNGKQGQGKKDSKLCGADVTSGEANLQAPDFLENLKEKKFVLIHGEGFGAWCWYKTISLLEEVGLSPIAIDLKGSGIDLTDTNRVNTLAEYSKPLTDYLQDLPDDEKTPQNHCSFCKSNCLATLAKFCSAIYENFHGHLVAYMLTIVGILKVVLVGHSSGGACLSYALEHFSNKISKAIYVCATMVATGQRPFDVFMEELGSEEIFMKDSKSLIYGNGKDKPPTGFMFEKEQIKGLYFNQSPTKVALKVIIPFITSGRYSVFDVENECETLSKLGDVLELSEFGLESVPVYDVALAMVSMRPFPLGPVMEKLSLSPENYGTGRRFFIQTLDDHALSPDVQEKLVRENPPERVFKIKGSDHCPFFSKPQSLHKILLEIAQIP 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 826071 830257 + Lsi08G000300.1 Lsi08g00030 667956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00030 458 PANTHER METHYLESTERASE 14, CHLOROPLASTIC-RELATED 211 325 - -
Lsi08g00030 458 PANTHER METHYLESTERASE 14, CHLOROPLASTIC-RELATED 364 457 - -
Lsi08g00030 458 MobiDBLite consensus disorder prediction 57 91 - -
Lsi08g00030 458 Pfam Alpha/beta hydrolase family 117 445 IPR000073 -
Lsi08g00030 458 Gene3D alpha/beta hydrolase 109 456 IPR029058 -
Lsi08g00030 458 PANTHER METHYLESTERASE 14, CHLOROPLASTIC-RELATED 25 185 - -
Lsi08g00030 458 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g00030 458 MobiDBLite consensus disorder prediction 8 32 - -
Lsi08g00030 458 SUPERFAMILY alpha/beta-Hydrolases 117 454 IPR029058 -
Lsi08g00030 458 MobiDBLite consensus disorder prediction 57 85 - -
Lsi08g00030 458 PANTHER METHYLESTERASE FAMILY MEMBER 25 185 IPR045889 -
Lsi08g00030 458 PANTHER METHYLESTERASE FAMILY MEMBER 211 325 IPR045889 -
Lsi08g00030 458 PANTHER METHYLESTERASE FAMILY MEMBER 364 457 IPR045889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00030 - - - csv:101208555 654.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00944 Lsi-Chr7:11769248 Lsi08g00030 Lsi-Chr8:826071 7.81E-89 dispersed
Lsi08g00030 Lsi-Chr8:826071 Lsi11g01039 Lsi-Chr11:17873764 4.29E-28 dispersed
Lsi08g00030 Lsi-Chr8:826071 Lsi11g01034 Lsi-Chr11:17829396 8.01E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1636 . . . . . . . . . . Cma01g00836 . Car01g00775 . . Cpe06g01012 . . . . . . . . Cla08g00040 Cam08g0039 Cec08g0213 Cco08g0092 Clacu08g0055 Cmu08g0053 Cre08g0043 . . . . . . . Cme09g00023 . . . . . . . . Sed06g0856 Cmo01g00876 Cmo09g01322 . . . Car09g01152 . Cpe02g01023 Bhi06g00240 Tan10g2040 Cmetu09g0728 . Hepe02g3268 . Lcy10g2140 . . . . . . . Lsi08g00030 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010779 0 1 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00030 Lsi_Chr08 FPKM 21.53371 21.402225 41.824444 43.182224 29.231167 27.984016 30.597212 152.832428 150.474152 150.301529