Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00031 ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCTCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCTGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCCCAGCGTGTTCCCAGATCATCTACCAAAAAAGATGGTCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCCGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGAGAGGGATGGAGAAGAAGAAGGCATGTGCTACTTTCAATGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGTATTGGAATTTCAGATGTTGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGCATGTTACAGTTGCAGAGCGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTTTGAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCACTCTCATCAAAAAATTCAGATCCTGAATTCAGACAACGGGAAGCGACCACCTCGTCCCATTAATGCTCGATCTGGGCCTAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTTCAGACATTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCGCCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATACCGCGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTTCTGTTAGACATGTTGGACGTCGCGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGGTCTTTTTGTTTTATTATATTGATAAGGACATGTATTATTTTCCATTGGACTGTGACAATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA 1806 44.3 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREASGSMIRSILLNNEARHGQSSSVAHSHQKIQILNSDNGKRPPRPINARSGPNDMSSNEPNPSGSEGDGKRASDIKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTGDVTTTVSGRNSSVENGCSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVFLFYYIDKDMYYFPLDCDNVYVIQQIMASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 831092 838531 - Lsi08G000310.1 Lsi08g00031 667957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00031 601 MobiDBLite consensus disorder prediction 449 467 - -
Lsi08g00031 601 Pfam Smg-4/UPF3 family 6 168 IPR005120 -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 441 496 - -
Lsi08g00031 601 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 503 IPR039722 GO:0000184
Lsi08g00031 601 MobiDBLite consensus disorder prediction 409 429 - -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 366 405 - -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 347 361 - -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 313 333 - -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 313 429 - -
Lsi08g00031 601 CDD RRM_like_Smg4_UPF3 9 94 - -
Lsi08g00031 601 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Lsi08g00031 601 MobiDBLite consensus disorder prediction 277 300 - -
Lsi08g00031 601 Gene3D - 2 97 IPR012677 -
Lsi08g00031 601 MobiDBLite consensus disorder prediction 168 205 - -
Lsi08g00031 601 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 1 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00031 K14328 UPF3, RENT3; regulator of nonsense transcripts 3 - csv:101208317 899.427
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1466 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00041 Cam08g0040 Cec08g0212 Cco08g0093 Clacu08g0056 Cmu08g0054 Cre08g0044 . . . . . . . . . . . . . . . . Sed10g2126 . . . . . . . . Bhi06g00236 Tan10g2035 Cmetu09g1975 . . . . . . . . . . . Lsi08g00031 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00031 Lsi_Chr08 FPKM 27.034241 30.124308 27.084349 26.47995 39.217972 41.042393 46.929001 38.187988 40.555786 43.415054