Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00034 ATGGGAAGAGGAAAGATAGAAATAAAGAGAATAGAAAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGCAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAGATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTGAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTTGAGAGGCTTCAACAAGCAAACATGGTGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTTTCTCCTAATATGATGGAAGGTGGAACTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGCTTATCCGGTGCAGTTTATGCATGGCGAAAGGGAGCATTGGAAGGGTCTTAG 732 40.85 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKQACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGTVTYSHQDKKMLHLGLSGAVYAWRKGALEGS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 849912 862269 - Lsi08G000340.1 Lsi08g00034 667960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00034 243 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lsi08g00034 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 217 - -
Lsi08g00034 243 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Lsi08g00034 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lsi08g00034 243 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi08g00034 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 217 - -
Lsi08g00034 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 Coils Coil 128 167 - -
Lsi08g00034 243 Pfam K-box region 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi08g00034 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi08g00034 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00027 Lsi-Chr1:320358 Lsi08g00034 Lsi-Chr8:849912 8.49E-31 dispersed
Lsi01g00205 Lsi-Chr1:1920957 Lsi08g00034 Lsi-Chr8:849912 7.44E-47 dispersed
Lsi02g00512 Lsi-Chr2:4335357 Lsi08g00034 Lsi-Chr8:849912 8.83E-40 dispersed
Lsi02g00845 Lsi-Chr2:7911295 Lsi08g00034 Lsi-Chr8:849912 1.37E-79 dispersed
Lsi04g02291 Lsi-Chr4:30056403 Lsi08g00034 Lsi-Chr8:849912 3.08E-43 dispersed
Lsi08g00034 Lsi-Chr8:849912 Lsi10g01545 Lsi-Chr10:19862865 4.71E-49 dispersed
Lsi09g01915 Lsi-Chr9:27992713 Lsi08g00034 Lsi-Chr8:849912 3.79E-39 dispersed
Lsi08g00034 Lsi-Chr8:849912 Lsi08g00040 Lsi-Chr8:938115 5.99E-23 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25704 PF01486 K-box 1.90E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00034 K09264 - csv:101208072 408.297