Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00047 ATGATGGTATCATCAATGTTGCTGAGTGTTTTGGTGGTGGTGATTATGGCGGCAGCGGCAGCTTCCGGACAAAATGGTAGTACATACGGCGGAAGGAGGGCGGCGATGGTGCCTGCCATGTTCATATTTGGAGATTCTCTTATTGATAATGGGAATAATAACAATCTTCCCACCTTTGCAAGAGCTGACTATTTCCCTTATGGTATTGATTTTCCTTATGGCCCAACTGGTCGTTTCTCCAATGGATACACTATTGTTGATGAAATAGCGGAGCTTCTAGGGCTTCCTTTAATTCCTCCAAGCACAGCTCCATCAAGGGGAGCAATGCGTGGACTAAATTATGCCTCAGCAGCTTCTGGAATCCTTGATATCACTGGAAGAAACTTTGGTCAGGTGGGTTGTTCTGTGAAATTAATCGAGGTGCGTATGGGTCGCATACCCTTCAACCAACAGATAAGGAACTTTGAGAACACGCTGGATCAAATAACCGGCAACCTTGGGGCCGCGATGGTGGCTCCGGTGGTGGCTCGCTGCATATTCTTCGTTGGAATGGGCAGTAACGACTACCTTAACAACTATTTAATGCCTAATTATCCCACCAGAAGCCAGTATAATAGCCGAGCATATTATGGTACTTGGCAGAGGCTTTACAACCTTGGAGGACGGAAGTTCATAATCCCGGGGATTGGAACAATGGGTTGCATTCCCAACATATTAGCTCGGACCTCCGATGGAAGATGCTCGGAAGAAGTGAACCAGCTGGCCCGCGATTTTAATGCAAATCTTAGAGCCATGATTGCAAACCTTAATGCCAATCTTCCTGGTTCAAGGTTCACGTACCTCGATATTGATCGCATGAATAGAGATATCCTTGCAAACCCTACACCTTATGGGTTCAGAGTGGTGGATCGTGGGTGCTGTGGGATAGGGAGGAACAGGGGACAGATAACATGTCTTCCATTCCAAATGCCATGTCTAAATAGAGATCAATATGTGTTTTGGGATGCATTCCATCCAACTCAAAGAGTCAATATCATAATGGCAAGAAGGGCTTTCAATGGTGACTTATCTGTTGCTTACCCTTTCAACATACAACAGCTTGCCACTCTTGATCTTTAA 1119 45.49 MMVSSMLLSVLVVVIMAAAAASGQNGSTYGGRRAAMVPAMFIFGDSLIDNGNNNNLPTFARADYFPYGIDFPYGPTGRFSNGYTIVDEIAELLGLPLIPPSTAPSRGAMRGLNYASAASGILDITGRNFGQVGCSVKLIEVRMGRIPFNQQIRNFENTLDQITGNLGAAMVAPVVARCIFFVGMGSNDYLNNYLMPNYPTRSQYNSRAYYGTWQRLYNLGGRKFIIPGIGTMGCIPNILARTSDGRCSEEVNQLARDFNANLRAMIANLNANLPGSRFTYLDIDRMNRDILANPTPYGFRVVDRGCCGIGRNRGQITCLPFQMPCLNRDQYVFWDAFHPTQRVNIIMARRAFNGDLSVAYPFNIQQLATLDL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1137806 1145584 + Lsi08G000470.1 Lsi08g00047 667973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00047 372 PANTHER OS05G0419800 PROTEIN 5 370 - -
Lsi08g00047 372 CDD SGNH_plant_lipase_like 38 355 IPR035669 -
Lsi08g00047 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 5 370 - -
Lsi08g00047 372 Pfam GDSL-like Lipase/Acylhydrolase 41 350 IPR001087 GO:0016788
Lsi08g00047 372 Gene3D SGNH hydrolase 31 354 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00047 - - - csv:101209444 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00538 Lsi-Chr2:4668744 Lsi08g00047 Lsi-Chr8:1137806 9.22E-105 dispersed
Lsi07g00727 Lsi-Chr7:7870625 Lsi08g00047 Lsi-Chr8:1137806 4.07E-60 dispersed
Lsi08g00047 Lsi-Chr8:1137806 Lsi11g01009 Lsi-Chr11:17101395 9.75E-29 dispersed
Lsi08g00047 Lsi-Chr8:1137806 Lsi08g00048 Lsi-Chr8:1153043 3.32E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1660 Blo01g01668 Blo12g00832 . . Bpe02g00274 Bpe04g00304 . . . . Cma01g00840 . . . . . . Bhi04g02590 . . . . . . . . . . . . . . . . . . . . Cme09g00036 . . Bda11g00935 . . . . . . Cmo01g00880 Cmo09g01300 . . . Car09g01143 . . . . . . . . . . . . . . . . Lsi08g00047 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00047 Lsi_Chr08 FPKM 3.078646 3.081283 0.429685 0.42721 0.331596 0.0 0.0 1.668098 1.777379 1.62