Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00048 ATGCAATCAAATGAGAAACAACTCAGAAGCAAAAGCCAGATCCATGATCTCCAACTAGTAGACGAAGGCATCACGAGAAACATTGCAAGATCTCAGTCCCCACCACCGCTGATGGCGATGATGATCAGGAGATCATCTGAGGCGTTGATTTTGGGTTCAGTGATTTTGACGGTTTGTTTGTGTTTGAGTACTCCAAAAGCAAAGGCTTGTTCACAGGCTGATCCGGGGAGTGGAGTTCCTGGTTTCTTCATTTTTGGAGATTCTTTAGTTGATAATGGGAATAACAATGCATTGCTTACGCTTGCCAGAGCCAATTATAGGCCTTATGGAGTTGATTTTCCTCAAGGCACCACTGGCCGCTTCACTAATGGTCGAACCTTTGTTGATGTCTTAGCTCAGCTACTGGGGTTTCGGACATTCATTCCTCCATACAGTAGAACTCGAGGAAGAGCCCTTCTTAGAGGAGTCAACTATGCATCTGGTGCAGCAGGAATTAGAGATGAGACTGGAAACAATTTGGGTGCTCATTTATCTATGAACAACCAAGTGGAGAATTTTGGAAGAACAGTGGAAGAAATGAGTAGGTTTTTCCGAGGAGACACTGAAGCACTGAGTTGCTATTTAAGCAGATGCATTTTCTATTCAGGAATGGGAAGCAATGACTATCTCAATAACTACTTCATGACTGATTTTTACAATACCAAATCTCAATACACACCTCAAGCTTATGCCTCTGCCCTTCTTCAAGATTACACTCGCCAACTTCGACAATTGTACCAACTTGGAGCTCGAAAAGTAGTTGTGACAGGGGTCGGGCAAATCGGCTGCATTCCTTACGAGCTCGCTAGATATCAAGGTAATAGTAGTCGTTGCAACGAAGAGATCAATGGTGCAATTGCTCTTTTCAACTCTGGCCTCCGCAAGCTTGTCGATCGTTTCAACAGTGGTCGTGTTCTTCCTGGTGCCAAGTTTGTGTACCTTGATGCCTACCAAAGCAACATTGACTTGATTGGAAATGCCTCAACTTATGGGAAAAACAATGGACAAATAACATGTTTACCTCTTCAGCAACCATGCCAAGATCGACGAGGCTACTTGTTTTGGGATGCATTCCATCCCACTGAGGATGCAAATATAGTGTTGGCCAAGATGGCATTCACCTCTCCTTCAAGAGCCTATGCATATCCCATTAACATACAACAATTAGCAATGTTGTAA 1218 43.51 MQSNEKQLRSKSQIHDLQLVDEGITRNIARSQSPPPLMAMMIRRSSEALILGSVILTVCLCLSTPKAKACSQADPGSGVPGFFIFGDSLVDNGNNNALLTLARANYRPYGVDFPQGTTGRFTNGRTFVDVLAQLLGFRTFIPPYSRTRGRALLRGVNYASGAAGIRDETGNNLGAHLSMNNQVENFGRTVEEMSRFFRGDTEALSCYLSRCIFYSGMGSNDYLNNYFMTDFYNTKSQYTPQAYASALLQDYTRQLRQLYQLGARKVVVTGVGQIGCIPYELARYQGNSSRCNEEINGAIALFNSGLRKLVDRFNSGRVLPGAKFVYLDAYQSNIDLIGNASTYGKNNGQITCLPLQQPCQDRRGYLFWDAFHPTEDANIVLAKMAFTSPSRAYAYPINIQQLAML 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1153043 1158194 + Lsi08G000480.1 Lsi08g00048 667974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00048 405 CDD SGNH_plant_lipase_like 80 389 IPR035669 -
Lsi08g00048 405 Gene3D SGNH hydrolase 69 390 IPR036514 -
Lsi08g00048 405 PANTHER OS12G0274200 PROTEIN 56 405 - -
Lsi08g00048 405 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 56 405 - -
Lsi08g00048 405 SUPERFAMILY SGNH hydrolase 81 385 - -
Lsi08g00048 405 Pfam GDSL-like Lipase/Acylhydrolase 83 383 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00048 - - - csv:101209198 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00204 Lsi-Chr1:1916431 Lsi08g00048 Lsi-Chr8:1153043 1.48E-125 dispersed
Lsi02g00846 Lsi-Chr2:7920885 Lsi08g00048 Lsi-Chr8:1153043 2.83E-71 dispersed
Lsi08g00048 Lsi-Chr8:1153043 Lsi11g01009 Lsi-Chr11:17101395 2.36E-67 dispersed
Lsi11g00942 Lsi-Chr11:14010644 Lsi08g00048 Lsi-Chr8:1153043 4.56E-37 dispersed
Lsi08g00047 Lsi-Chr8:1137806 Lsi08g00048 Lsi-Chr8:1153043 3.32E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012385 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00048 Lsi_Chr08 FPKM 42.895927 48.958633 89.221939 93.039734 67.744698 78.987633 68.611412 17.918398 19.459345 17.049927