Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00050 ATGGAAGTGAAGCTCAGCCAGAGAAATAGAGCAGACCGTTTTTCTCTCCTCCCCAAGTTGCTCCCACACTCGACTCTCCCTTCTCTAACTCACAGAAACTTACACAACTTGCTTTGCTTTTGTGCTTTTCCCTCCAATTTCTACCCCAGAAATTGGGCCAACACCAGAAGATCATTCAAGAATCAATTCAGAGCCATTGCTATGACCCAGATATTGATGGGTGATTTATGGTTTGAATTTCTTTTGAAACCTCTTTTCCGAGGATGTTTTGAGATTGTAAAGATTGAGTTAAGATGGAGGTTTCAACTTCAAGATATATCCAAAGATCAACTCTCCACCAAGCACCAGTTTGTTCATATTATAGAAGGGAGGGAGAGCTTGACTTCAATTTCAAATCAGAATGGAGATCCTGCACATTCCATTGTCATAGCTAATAAGAAGATAATGGACACGGATCTAGAACAAAAGGGGCAGAATATCAAGATTCAAAACCCTCGAGCGATTAGAGATGTATATCAATTAGAAGAAAAGCTTCAAAGTGCTTTGAATGGACTTCGAAACTATAAGAAGCTTTTCGCGCAAGCCTCCTCTCATCTACCTCCTGCTAGAACCACTAGTTTTATAGTTTTGGTTCCTCTTATAGTATTTTGTGCCAGATGCATAATTGGTGCCTCTTCTGCTAGAGTTTTCGGAACATTGAAGCTTGAAACCGTTGATAAACGAGAGGGAGAACATCACAAGTTCAGAAGCGGGCACTGGAGATCTGCTCTTCGTGATATAAGGGAAGTGGATGGTTTGGATTGTGAGTCCCCTATAGATTCTTCAAGTCCAGAAGATGAACAGATCTCAGTAGAAGATTTATCACATGCTTACAAGAAACTGGACCAGGATTACGAAAAATTTCTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGTGGGGGTACCCAGAGACCTGAACAGGAATAG 972 41.36 MEVKLSQRNRADRFSLLPKLLPHSTLPSLTHRNLHNLLCFCAFPSNFYPRNWANTRRSFKNQFRAIAMTQILMGDLWFEFLLKPLFRGCFEIVKIELRWRFQLQDISKDQLSTKHQFVHIIEGRESLTSISNQNGDPAHSIVIANKKIMDTDLEQKGQNIKIQNPRAIRDVYQLEEKLQSALNGLRNYKKLFAQASSHLPPARTTSFIVLVPLIVFCARCIIGASSARVFGTLKLETVDKREGEHHKFRSGHWRSALRDIREVDGLDCESPIDSSSPEDEQISVEDLSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1212161 1216348 + Lsi08G000500.1 Lsi08g00050 667976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00050 323 Coils Coil 284 304 - -
Lsi08g00050 323 ProSiteProfiles LysM domain profile. 117 162 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00050 - - - csv:101208955 409.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1662 . Blo12g00831 . . . . . . . . . . . . . . . . . . . . . . Cla08g00064 Cam08g0061 Cec08g0190 Cco08g0119 Clacu08g0076 Cmu08g0074 Cre08g0066 . . . . . . . Cme09g00041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00050 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011440 0 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00050 Lsi_Chr08 FPKM 14.56142 16.194151 17.804289 18.354736 17.350883 18.123022 21.250395 20.062462 18.863482 21.154154