Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00053 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCACAAAGAGTCTGAAAAAGATTTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGTTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAAGCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAAGCAAATAATGATAATGCTTCAGCAGGTGGAAAGCAGCCTGACATTTTTAGGTTAGCTAGCTTGTCTAAAGGGGCTGAAACCGAACTTGTCAAGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAATTGGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCAGGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACCTTGGTGGCCTTGCAGCTGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTCAAGATTGGAGACCTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGTCGGGTTGTGACATTGTGGTACAGGGCACCCGAGCTTTTGCTTGGTGCTACCCAATATGGACCCGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTCTGTGGTTCACCGTCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAGCCTCAACATCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTAGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTGGCCCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAAATATCCTCCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAGGCAGAAGCTGTGAAGGGACGTCATCCTGAATCAGTAAGAAGGGGTTCAAGAGACACCAAGGCAGTTCCTACTCCCGAATTCAGTACTCAAGGAGATATTACTATAAAGGTACACCCGATTTCGAAAAAAATGAGTGCAAAATACAACCCTCAAGAAGACAGTGAGCCTCCGAGAGTTGTGCAGAATCGGTACAACCACTCAACATCTATGGTGCACCCAAGCATTGCAGGGTTATGGGGTAAGCCTACCGGAGCCTCAAGAAATGGTGCAGAGTCAAAAACACAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTCAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGAATCGATAAAGCAAAGACGAACAAGAGTTATGGTGATCAGCTTTGA 1929 44.43 MGCICSRDSSEPEDSSHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKANGGSVHKAKANGGSVHRAKEDDESENKSIKAAKANNDNASAGGKQPDIFRLASLSKGAETELVKAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLGGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDLGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFSTQGDITIKVHPISKKMSAKYNPQEDSEPPRVVQNRYNHSTSMVHPSIAGLWGKPTGASRNGAESKTQKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARIDKAKTNKSYGDQL 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1230141 1234791 - Lsi08G000530.1 Lsi08g00053 667979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00053 642 Coils Coil 447 467 - -
Lsi08g00053 642 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Lsi08g00053 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Lsi08g00053 642 SMART serkin_6 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00053 642 MobiDBLite consensus disorder prediction 1 100 - -
Lsi08g00053 642 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Lsi08g00053 642 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Lsi08g00053 642 MobiDBLite consensus disorder prediction 68 85 - -
Lsi08g00053 642 MobiDBLite consensus disorder prediction 458 490 - -
Lsi08g00053 642 PANTHER CELL DIVISION PROTEIN KINASE 78 630 - -
Lsi08g00053 642 MobiDBLite consensus disorder prediction 10 25 - -
Lsi08g00053 642 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 78 630 - -
Lsi08g00053 642 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Lsi08g00053 642 MobiDBLite consensus disorder prediction 458 483 - -
Lsi08g00053 642 Coils Coil 613 633 - -
Lsi08g00053 642 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00053 642 MobiDBLite consensus disorder prediction 536 581 - -
Lsi08g00053 642 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00053 642 MobiDBLite consensus disorder prediction 550 576 - -
Lsi08g00053 642 CDD STKc_CDK9_like 145 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00053 Lsi-Chr8:1230141 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi08g00053 Lsi-Chr8:1230141 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83806 PF00069 Pkinase 5.70E-69 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00053 K08819 - csv:101208709 1206.82