Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00071 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGTGCTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCAGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCAGAGATGGCGGCGACAGCCTATGACGTCGCTGCCTACCATTTCCGTGGTCGTGATGCTCGCCTCAACTTCCCACATCTTGTCAACTCTCTCCCTTTCCCTCTTAGCTCCACTTCTGATGATATCCGTCTCGCTGCCCACGAGGCAGCGTTGCGGTTACGAACAACACCTGCAGTTGCGTCTGAGAGTGAGGAAACTTCCGCCTCAGGACTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCACCGAAGATGTGGATGCAAATGTCATCGGAGAGTTTGCTTATAGACGAGTTTTCAAATGGTACCGTGTTTGTTGATGACATAGATGATGAGATGTGGGAGAATATGCATAATGATTCGCTATGGGATCCTTAG 555 52.25 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTSDDIRLAAHEAALRLRTTPAVASESEETSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLIDEFSNGTVFVDDIDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1519264 1519818 + Lsi08G000710.1 Lsi08g00071 667997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00071 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lsi08g00071 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lsi08g00071 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lsi08g00071 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Lsi08g00071 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 183 - -
Lsi08g00071 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 5 183 - -
Lsi08g00071 184 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lsi08g00071 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Lsi08g00071 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lsi08g00071 184 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01139 Lsi-Chr6:21664451 Lsi08g00071 Lsi-Chr8:1519264 5.45E-21 dispersed
Lsi08g00071 Lsi-Chr8:1519264 Lsi11g00240 Lsi-Chr11:2429121 2.90E-30 dispersed
Lsi08g00181 Lsi-Chr8:3908631 Lsi08g00071 Lsi-Chr8:1519264 6.82E-34 dispersed
Lsi08g00071 Lsi-Chr8:1519264 Lsi08g00077 Lsi-Chr8:1652979 5.81E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25706 PF00847 AP2 6.10E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00071 - - csv:101207243 315.464