Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00077 | ATGGATCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTCTCCGAAATCCGCGAACCGGGTAAAAAAACCCGAATCTGGCTCGGCAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCTCACCTCAACTTCCCCGAGCTGGCTGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGGGTCGCCAACACTAAGCCGCCTGACCCTCCGGCGCCGGTTCGCGTGGGGCTGTCCCCTAGCCAGATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGATTGGGACGAGGAATATAACAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATCTAA | 477 | 58.07 | MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHSIWDYSSI | 158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1652979 | 1653455 | + | Lsi08G000770.1 | Lsi08g00077 | 668003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00077 | 158 | Pfam | AP2 domain | 3 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | SUPERFAMILY | DNA-binding domain | 4 | 62 | IPR016177 | GO:0003677 | |
Lsi08g00077 | 158 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 | 4 | 154 | - | - | |
Lsi08g00077 | 158 | SMART | rav1_2 | 4 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | Gene3D | AP2/ERF domain | 4 | 62 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 4 | 154 | - | - | |
Lsi08g00077 | 158 | PRINTS | Ethylene responsive element binding protein signature | 5 | 16 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | PRINTS | Ethylene responsive element binding protein signature | 43 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | ProSiteProfiles | AP2/ERF domain profile. | 4 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g00077 | 158 | CDD | AP2 | 3 | 63 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00077 | Lsi-Chr8:1652979 | Lsi11g00240 | Lsi-Chr11:2429121 | 2.25E-35 | dispersed | |
Lsi08g00071 | Lsi-Chr8:1519264 | Lsi08g00077 | Lsi-Chr8:1652979 | 5.81E-54 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25707 | PF00847 | AP2 | 3.20E-13 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00077 | - | - | csv:101207003 | 289.656 |