Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00077 ATGGATCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTCTCCGAAATCCGCGAACCGGGTAAAAAAACCCGAATCTGGCTCGGCAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCTCACCTCAACTTCCCCGAGCTGGCTGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGGGTCGCCAACACTAAGCCGCCTGACCCTCCGGCGCCGGTTCGCGTGGGGCTGTCCCCTAGCCAGATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGATTGGGACGAGGAATATAACAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATCTAA 477 58.07 MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHSIWDYSSI 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1652979 1653455 + Lsi08G000770.1 Lsi08g00077 668003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00077 158 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Lsi08g00077 158 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Lsi08g00077 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 154 - -
Lsi08g00077 158 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Lsi08g00077 158 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Lsi08g00077 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 154 - -
Lsi08g00077 158 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Lsi08g00077 158 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Lsi08g00077 158 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Lsi08g00077 158 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00077 Lsi-Chr8:1652979 Lsi11g00240 Lsi-Chr11:2429121 2.25E-35 dispersed
Lsi08g00071 Lsi-Chr8:1519264 Lsi08g00077 Lsi-Chr8:1652979 5.81E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25707 PF00847 AP2 3.20E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00077 - - csv:101207003 289.656