Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00097 ATGGCGTTGAATATGAAAACCCTCACCCAAGCTCTGGCCAAGACCGCCGCGGTGATCGAGAAAACCGTTCATACCACCGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAGCTTCTTGATCAGATCGGCTCCGCCGGTCCCGGCATGGTTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGCCTCAGCAATATCCCACAGTTTGCGTATGGGTTTTGGATAAGAGGATTCTGTCGGAGGCTAGGGCTCGCGCGGGGTTGTCGAAATCTGTTGAGGATTCGTTTTTGGATCTGATTCGAGCCGATGCGGGGCGGTTGGTGAGGCTGAGGCATCCGCGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAATAAGAATGCCATGGCCATGGTTACTGAGCCGCTGTTTGCGTCGGTGGCAAATGTTGTTGGGAATTTGGACAATGTTGCTAAGATTCCTAAGGAGCTCATTGGTTTGGAAATGGGATTACTGGAAATAAAGCATGGTTTGCTTCAGATAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCCCATCTCATTCACCGCGCTATATCTCCAGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTACTGGATTTGGCTTTGCAATTCCAGCAGATCAGACTTCGAGTGACATGGCTACCATGCAAGCTTTCCACTATGCCGAATACGATGTTGAAGATTCTGTGCTGCCTCTTCAGCCATCTCTGAATTACACTGCTCCTGAATTGGTTAGGAGTAAATCATCTTTGGTTGGTTGTTCCTCAGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGATTGCTAGAAAGCCTTTGTTTGACTGCCACAACAATGTTAAAATGTACATGAATTCCTTAACTTACCTGTCAACTGAGTCATTTGCTTCGATTCCTCCGGAGTTAGTCCCTGACTTGCAGAGAATGCTATCATCAAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACGGGTTCTCCATTTTTTCGAGATGACACAAGGCTGCGTGCTCTTCGGTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTCTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGTACTAGCCATCACCTACCCAGTTCTCTTGTGCCAAATTTTGTAGCATTTACATGGTTATCCTCCGAGGTTGGTGACATGCATCTAAGCTAG 1251 46.6 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMVWKLYSAKARDSSRPQQYPTVCVWVLDKRILSEARARAGLSKSVEDSFLDLIRADAGRLVRLRHPRVVHVVQALDENKNAMAMVTEPLFASVANVVGNLDNVAKIPKELIGLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLTGFGFAIPADQTSSDMATMQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSLVGCSSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNSLTYLSTESFASIPPELVPDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRTSHHLPSSLVPNFVAFTWLSSEVGDMHLS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2051577 2058973 + Lsi08G000970.1 Lsi08g00097 668023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00097 416 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00097 416 Gene3D Transferase(Phosphotransferase) domain 1 165 384 - -
Lsi08g00097 416 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 389 - -
Lsi08g00097 416 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Lsi08g00097 416 CDD PK_SCY1_like 45 346 - -
Lsi08g00097 416 Pfam Protein kinase domain 110 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00097 416 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Lsi08g00097 416 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00097 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00097 Lsi-Chr8:2051577 Lsi01g01532 Lsi-Chr1:13427280 9.44E-12 dispersed
Lsi08g00097 Lsi-Chr8:2051577 Lsi02g02260 Lsi-Chr2:29136937 5.11E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83807 PF00069 Pkinase 4.90E-25 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00097 Lsi_Chr08 FPKM 11.297782 11.78196 14.369361 15.137569 9.441319 9.69438 9.302211 15.523686 14.441544 17.269438