Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00101 ATGAGGTGTTTCATATGGGGAGTTTTCTTCCTTCTAACTGGCCTTTCCTCTTCATCTTCTCCGGCACCGGCATCTTTCGTCGGAGTTCAAGACGGCCATTTTCAGTTAAATGGTTCTCCATTTCTGTTCAATGGCTTTAACTCTTACTGGATGATGTCCGTCGCCGCTGACCCGAACCAACGCCATAAAGTCTCCGACGTCTTCCGTGATGCCGCCGCTGCCGCTCTCACCATCTGCCGAACGTGGGCCTTCGCCGACGGTGGCGACCATGCCCTCCAAATCTCTCCCGGCGATAAATGTATAATTTCATTAGTTAAAAAAGAAACTTTCAAACGTCTGAAAAGTAGAATGATATTGAGTTTCGTGAATAATCACAAAGACTACGGTGGAAGGGCACAGTATGTACGGTGGGCCAAAGCTGCCGGCGTTCAAATTCATGATGACGATGATTTCTATACTAATCAACTTATCAAGGCCTACTACAAAAATCACGTTCAGAGAGTGTTGAGAAGGAAGAACACAATAAGTGGTTTGAGATATATGGATGATCCGACGATTATGGGTTGGGAACTTATGAATGAACCACGTTGTGAAGTTGATTCTTCAGGCAACACTATCAATAGATGGGTAGAAGAAATGGGATGTTATGTGAAATCAATTGATAAAGAACATTTGGTTGGCATTGGAATGGAAGGATTCTATGGAGATTCAAGCCCAACCAAAATCAAATCCAACCCAAACAGTTACAGACTTGGCACTGATTTTATAACCAACAATCTCAACAAACACATAGACTTTGCAACAATTCATGCCTATCCTGATGCTTGGCTACCAGGGCAAAGTGACGCTACCAAAATGGCATTCCTGGAGGAATGGATAACAACTCACTGGACAGACTCGAAGGTTATCTTAAAGAAGCCATTGATTTTTGAAGAATTTGGAAAGTCAACCAAAGGCCAAAACCAAACATTCAGTGTAAGAGACAGAGATTTATTCCTCAGTAAGGTTTATTCAATCATCTATAACCTTGCAAGAAATGGAGCAACCATGGCTGGAGGTCTGGTCTGGCAAGTTATGGCTGAAGGAATGGAGTCGTATTACGATGGATATGAGATCGTTCTTTCCCAGAATCCTTCAACGAATGCAATTATAACACAACAGTCAAACAACATGGCTGCCCTTCATACTGTAAAACTCAACGTTAAAACTCAACACCGCCTCAACAAAAGTAGATACTAA 1239 42.45 MRCFIWGVFFLLTGLSSSSSPAPASFVGVQDGHFQLNGSPFLFNGFNSYWMMSVAADPNQRHKVSDVFRDAAAAALTICRTWAFADGGDHALQISPGDKCIISLVKKETFKRLKSRMILSFVNNHKDYGGRAQYVRWAKAAGVQIHDDDDFYTNQLIKAYYKNHVQRVLRRKNTISGLRYMDDPTIMGWELMNEPRCEVDSSGNTINRWVEEMGCYVKSIDKEHLVGIGMEGFYGDSSPTKIKSNPNSYRLGTDFITNNLNKHIDFATIHAYPDAWLPGQSDATKMAFLEEWITTHWTDSKVILKKPLIFEEFGKSTKGQNQTFSVRDRDLFLSKVYSIIYNLARNGATMAGGLVWQVMAEGMESYYDGYEIVLSQNPSTNAIITQQSNNMAALHTVKLNVKTQHRLNKSRY 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2086201 2093511 - Lsi08G001010.1 Lsi08g00101 668027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00101 412 SUPERFAMILY (Trans)glycosidases 26 383 IPR017853 -
Lsi08g00101 412 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 9 398 - -
Lsi08g00101 412 Pfam Cellulase (glycosyl hydrolase family 5) 146 321 IPR001547 GO:0004553|GO:0071704
Lsi08g00101 412 PANTHER - 9 398 IPR045053 GO:0004553
Lsi08g00101 412 Gene3D Glycosidases 23 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00101 K19355 MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] - csv:101222882 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00101 Lsi-Chr8:2086201 Lsi08g00724 Lsi-Chr8:15601838 1.10E-112 dispersed
Lsi08g00101 Lsi-Chr8:2086201 Lsi01g00664 Lsi-Chr1:5331986 1.29E-123 transposed
Lsi08g00101 Lsi-Chr8:2086201 Lsi04g01690 Lsi-Chr4:24289811 1.16E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00101 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012549 0 1 0 0 0 1 0 1 1 2 1 1 0 1 1 0 1 0 0 1 2 1 1 1 1 1 0 1 1 6 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00101 Lsi_Chr08 FPKM 1.517478 2.276989 2.89766 2.993223 10.369802 9.896167 12.269958 5.685459 5.558887 5.82482