Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00117 ATGGCTCCGTTGGCTTTTCTTCATGTGTTCTTCTTCTATACAGCTCCTTATTTTTTTGCAGAGTCTAAAATTCTATACAATGGATTTGGCGAAGGAAAAAGATTGGTTCTTGATGGGATGGCAGTTGTTAAGCCGTCTGGTGCGTTATGCCTCACCGACAATTCACAAAATGTCGTAGGCCATGCGTTCTTTCCTGATGCAGTTAAGATGTTTGATAAAAGTTCTCCCTCATATCCCAATGCTTCATCTTTCAGCACAACTTTTGTGTTTGCCATCGATCCTTCAATCCCCGGCCAAGGTGGGCACGGCTTGGCTTTCACCTTGGCTCCATCAACCAAGTTTGATGGAGCTGAAAGTGGACACTACCTTGGATTATTCAACCCTCTCAACGACGGAAACCCATCCAACCATATATTTGCGGTTGAATTTGACACTGTTAATGGACATGGTGAACATAGAAATTCCAGGGGAAACCATATTGGGATTAACATCAATGGCGTTTCATCAGTTTCATCTAAAATAGCTTCTTCTTCCTATTATATTGATGACAAAATTTTGAACGAAATCCTAATTGATTCTGGTGATCCTATCGCTGTTTGGATTGAATATGATGGTCTGAATAGAACTTTGAACATCACTATAGGTCTTTTGGAGCAAAAGCCAGAGATGCCACTCATTTCATATCCTTATGATCTAACTTATGTTATGAAGGATCAAATGTTCGTGGGGTTCACCGCATCAACCGGGAAAGAAACAAGCTCCCATTACATTTTGGGATGGAGCTTTGCAGTGAATGCACCGGCACGGCACCTGAGGTACTCTCTCCTTCCCAACAGACCAAAAGACCAAAAATTTTCTTCTTCGTCCAATAATCACCAGTTGAAGGTTATTTTATCCGTTTCATCTATTGTGGCCATTTTGGGAATTGTTTTCTTAACCTTCTTGTTTATAAGAATGAAGAAAACAGAGAGTTTGGAGGATTGGGAAAGAGATTGCCCTCATAGATTCAACTACAAGGATCTTTACACAGCAACAAATGGATTTAGTGACAGCGACCAAATTGGAATTGGCGGATTTGGGTCAGTATATAAAGGCAAGTTAAGTTCAACTGGAGCTGAGATTGCTGTGAAGAGAGTAAAACAAAACTCAAGCCAAGGAATGAAGGAATTTGCAGCGGAAATCGAAAGCTTGGGACGATTAAGACACAAGAACTTGGTTAATCTTCAAGGATGGTGCAAGAAAAAGAACGATCTTCTCATAGTTTATGATTATATTCCAAATGGGAGTCTTCATTCTCTTCTCTATACTCCAAAACAGAGCTTGGTATTGAAATGGGAGCAAAGATTCAACATCCTTAAAGGCATTGCTGCAGGATTACTTTATCTTCATGAAGATTGGGAGCAAGTAGTGATCCACCGAGACGTAAAGCCAAGCAATGTTCTGATCGACACCGACATGAATGCCCGGTTGAGCGATTTTGGATTGTCCAGGCAATATGACCACGACGAAATATCGCACACGACTCGAGTTGTCGGCACGATAGGTTACATACCGCCGGAGTTATTTCGCACGGGGAAGGCGTCGAAGAGCGCAGATGTCTTTGCATATGGAGTTCTGCTTCTGGAAGTGGCGTGTGGAAGAAAGCCTCTAGGATCAAACCAATTCATATTGGTGGATTGGGTGATGGAATGTTATGAAACAGGGGACATTCTTTATGTGGCTGATCCAAAATTGGATTCAATTTATAAGGCGGAAGAGATGGAGATGGTGCTGCAACTCGGGCTTCTTTGTACTCATTGGAAACAAGAAGCTCGACCTTCAATGAGACAAATTGACAATGGATGA 1845 41.79 MAPLAFLHVFFFYTAPYFFAESKILYNGFGEGKRLVLDGMAVVKPSGALCLTDNSQNVVGHAFFPDAVKMFDKSSPSYPNASSFSTTFVFAIDPSIPGQGGHGLAFTLAPSTKFDGAESGHYLGLFNPLNDGNPSNHIFAVEFDTVNGHGEHRNSRGNHIGININGVSSVSSKIASSSYYIDDKILNEILIDSGDPIAVWIEYDGLNRTLNITIGLLEQKPEMPLISYPYDLTYVMKDQMFVGFTASTGKETSSHYILGWSFAVNAPARHLRYSLLPNRPKDQKFSSSSNNHQLKVILSVSSIVAILGIVFLTFLFIRMKKTESLEDWERDCPHRFNYKDLYTATNGFSDSDQIGIGGFGSVYKGKLSSTGAEIAVKRVKQNSSQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGSLHSLLYTPKQSLVLKWEQRFNILKGIAAGLLYLHEDWEQVVIHRDVKPSNVLIDTDMNARLSDFGLSRQYDHDEISHTTRVVGTIGYIPPELFRTGKASKSADVFAYGVLLLEVACGRKPLGSNQFILVDWVMECYETGDILYVADPKLDSIYKAEEMEMVLQLGLLCTHWKQEARPSMRQIDNG 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2544376 2546306 - Lsi08G001170.1 Lsi08g00117 668043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00117 614 Pfam Legume lectin domain 25 271 IPR001220 GO:0030246
Lsi08g00117 614 CDD lectin_legume_LecRK_Arcelin_ConA 26 265 IPR001220 GO:0030246
Lsi08g00117 614 CDD STKc_IRAK 354 611 - -
Lsi08g00117 614 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 8 611 - -
Lsi08g00117 614 Gene3D - 23 267 - -
Lsi08g00117 614 PANTHER - 8 611 - -
Lsi08g00117 614 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 280 IPR013320 -
Lsi08g00117 614 ProSiteProfiles Protein kinase domain profile. 348 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00117 614 Gene3D Transferase(Phosphotransferase) domain 1 425 613 - -
Lsi08g00117 614 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Lsi08g00117 614 SUPERFAMILY Protein kinase-like (PK-like) 332 612 IPR011009 -
Lsi08g00117 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Lsi08g00117 614 Pfam Protein kinase domain 349 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00117 614 Gene3D Phosphorylase Kinase; domain 1 333 424 - -
Lsi08g00117 614 SMART serkin_6 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02240 Lsi-Chr3:33409266 Lsi08g00117 Lsi-Chr8:2544376 0 dispersed
Lsi03g02241 Lsi-Chr3:33415119 Lsi08g00117 Lsi-Chr8:2544376 0 dispersed
Lsi08g00117 Lsi-Chr8:2544376 Lsi11g01564 Lsi-Chr11:23925398 5.74E-146 dispersed
Lsi08g00117 Lsi-Chr8:2544376 Lsi03g02126 Lsi-Chr3:32450062 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83808 PF00069 Pkinase 2.00E-51 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00117 - - csv:101205100 1021.15