Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00135 ATGAGTTTCATGGCTGGTTCATCATCTCATCCTTATGATCATATGGGTTTTGATGTTTTCATAAGTTTCAACAGACATGATGAAAACAGTATCTACAAAGGTTTTACAAAGGATTTATATGAGAGTCTGTGTAGATGGGGAATGAAGGTGTTTATGGATAATAATGGTGATGGGGATGATAAGAAAGATGAAGATAATCTGAGTGATAAAATTGTGAAAGCAATTGAAGGATCAAAGACTTGCATAGTAATCCTATCAAAGGGGTATGCTTCTTCCAAGTGGTGTTTGAGAGAATTGGTTAAGATAGTGGATCACAGAAACAAAACCACTTGCCAAGTCCTTCCTCTGTTTTATGGTCGCTCTTTTGCTGGTGGTCCTCCGAGTCATAAGAAACATCAATATGAAGAAGCTCTTAAAGAATTCATTGATAGTGAGAAAAGACAAAAATACTTGAAGGAGGTCCAATGGTGGAGGGAGGCTATGTCACAAATTTGCTCTCTCTCAGGAGTAGATTTACCATCAATATTCACGATCTTGTTCGTCTCCTCTAGAATGACGATAAAGTTGATATTCGATAAGTTGGTTCATCTTAAGTTGGTAGCCGAAAGTAGTTATTTAGTTGAAATGCCACTTCGATTATGTACAATGGAAATGCTCCTTGGCTTAACATCAAATGATGTACATTTGATAGGGATTGTAGGGATGGGTGGTATTGGTAAGACTACCATCGCCCAACATCTTTACGATAAATTTGCAGATAGATTTAGGAATAACTGTTGCTTTCTTCACATTGCTGGAAACAATATAGTCTCCTTGCAGCAACAACTACTTTCACAAGCTTTTCCCCTAGAAGATAACAAAGTTTTTGATGAGAACCTTGGAGTAAAAAGGATTAAGCATAATTTGGGATCATGTGGAAAGGTGCTTTTTGTTTTTGATGGGATAAGCAAAAAAAGTCAATTAGAAATGTTAGTTGGACGCCCTGATTGGTTCGGTGCAGGGAGTCGAATCATTATTACAGCAAGAAATAAAGATATTCTTCGTCATACAAACTTGAAAGACAAAGTGCAAGAATACAATGTAGAATTACTTTCTCATATGAGTGCCTTCTCCCTCTTCTGCAAGCATGCATTTGGAGATGACCTTCCAACAGAAAATTTAAAGGATCTTTGTAATGAGATAATCGAAAAGGTTGGACGACACCCATTAGCTTTGGTAAAAATAGCATCTTCTTTGTTTGGTCAAGGTGTAGATACATGGGAAGATACATTGAAGAGTTATCATAAACTAGTTTATGATAATATTTTCTTTGATGTATTAAAGACAACTTATGAAGAATTAGAAGTAGAGAGCCAACAAATTTTTCTGGATTTGGCATGTTTCCTCAATGGAGAGAAGGTGGATAGAGTGATTGAAATACTTGAAGGCTTTGGTTATGCCTCACCTCACACTAAATTGCAAGTGTTGGCAGATAGATGTCTTATTGATATTTCAGATGAACAAATACAAATGCATAGCTTGAACATTTGTATGGGCCAAGAAATTGTGTGTCGCGAGCTGGGAACTCGACGACAAAGTAGGATTTGGCAACGAGAAGAAGCTCGTCGTCTATTTCATGAAAACTACGAATTAAAACACATTCAAGGAATAGTGATGGACCTAGAGGAGGAAGAAGAATTAGTATTGGAGGCCAAGTCATTTGCAGATATGTCTCAGCTAAAAATTTTACAAATCAGCAATGTACAACTTTCTGAAGATATTAAATCTCTGTCAAATAAATTGACATTGCTCAACTGGCCTGGCTATCCTTCAAAGTATTTGCCATCAACTTTTCAACCACCACCGCTTCTTGAATTACACTTGCCTGGTAGTAAGGTCGAACGACTTTGGAATGGAAGAAAGAAATTTGAGAACTTGAAGGAGATTGATGTAAGTGGGTCAGAGTACTTGATAGAGACTCCTGATTTTTCAGAGGTTCGAAATCTTCGACGATTGATTTTACGAAATTGTGGAAGACTACATAAAGTTCATTCTTCAATAAATAGACTCGAACGTCTTGTTTTATTGGATATGGAAGGTTGTTTTCGATGGTGCATGGAATATTTGACTGAACTACACATTGATGGGACTTTCATAAATCAACTTTCTCCCTCCATTACATATCTAATTAGCTTGGTTTTATTGAACCTAAGGAATTGTACAAAACTTTATAGTCTTCCAGCTGAAATGGGTAGCTTGAGCTCTCTTAAAACTCTAATTTTGAGTGGCTGCAAAGACTTGGACCAGATTCCACCAAGTTTGGGGAATGTAGAGTCTCTTGAAGAGCTTGACATTGGGGGAACATCCATAAGTGTAATTCCTTTCTTGAAAAATCTAAGAATTTTGAACTGTGAAAGGCTGAAAAGTAATATTTGGCATTCTTTGGCTAGTTTGCCAACACATTCTTTTAGGTCACTCAAAGATTTAAATTTAAGTGATTGCAATCTTGTGGATGAAGACATTCCTGATGATTTTGACCTCTTTTCTTCATTGGAAATTTTAGATCTTAGCAGCAATCATTTTGAAAGCCTGCCAGAAAGCATTGAACAACTTATTAACCTTAAAGCATTGTACTTGAATGACTGTCACAAGCTAAAGCAAGTACCTAGGCTTCCACCAAGTTTACAATATGTTGGAGGAGAAAAGTCCTTGGACATGTTAAGAAATTCTCAAGGTTCCTCTGCAAATTACACAACATCATATTTTGCGTCTAATCCTCTTCTGATTCCTTTAGTACCTTCTTGCCAAACTTTAGTTGGAATGGAGAATCAAGTGGATAATGTACGCAATTTCTTAGATTTAGAAAGTTCCGACGACGTACTCGTTGTAGGAATTTTTGGATTAGGTGGTATTGGTAAGACAAGCATTGCTGAAGTTGTTTTCAATAAAATTGCAGATAAATTTGAGGGTAGTTGTTTTATTTACATTTCAAAGCAGAATAATCTAGTCTCACTTCAACATCAAATGCTTTCTCAACTTCTATCGAAAGAAATTAGAATTTTGGATGATGATCATAGAGAGCAAGTGGTTAAAGATCTCCTAATCGACAGAAAGCAAATTGATAAGTTAGTTGGAAGTCCAGATTGGTTTGGACCAAGGAGTAGAGTTATTATTACGAGTAGAAACAGAGATGTTCTTCATCAACTTAATTACAGAGATAAAGTGAAAGAATACAATGTGGAGTTACTTTCTCATGAGAGTGCTTACTCACTATTTTGCAATAATGCATTTGGAGATCATAGCCCTTCTGATAAAAATGAAGTTTGTAATGAAATTGTGGAAAAGGTTGGAAGATTTCCATTAGCTTTGAAAACCATTGGTTCCTATTTGCATAATAAGGAGTTGGTTGTATGGAATGAAACATTGAAGAGACTATGTGAAGTGGAACAAGATTTCTTTGATACAATATTGCAGAGAACTCAAAAGAATTTACACCAACCTTAG 3483 36.06 MSFMAGSSSHPYDHMGFDVFISFNRHDENSIYKGFTKDLYESLCRWGMKVFMDNNGDGDDKKDEDNLSDKIVKAIEGSKTCIVILSKGYASSKWCLRELVKIVDHRNKTTCQVLPLFYGRSFAGGPPSHKKHQYEEALKEFIDSEKRQKYLKEVQWWREAMSQICSLSGVDLPSIFTILFVSSRMTIKLIFDKLVHLKLVAESSYLVEMPLRLCTMEMLLGLTSNDVHLIGIVGMGGIGKTTIAQHLYDKFADRFRNNCCFLHIAGNNIVSLQQQLLSQAFPLEDNKVFDENLGVKRIKHNLGSCGKVLFVFDGISKKSQLEMLVGRPDWFGAGSRIIITARNKDILRHTNLKDKVQEYNVELLSHMSAFSLFCKHAFGDDLPTENLKDLCNEIIEKVGRHPLALVKIASSLFGQGVDTWEDTLKSYHKLVYDNIFFDVLKTTYEELEVESQQIFLDLACFLNGEKVDRVIEILEGFGYASPHTKLQVLADRCLIDISDEQIQMHSLNICMGQEIVCRELGTRRQSRIWQREEARRLFHENYELKHIQGIVMDLEEEEELVLEAKSFADMSQLKILQISNVQLSEDIKSLSNKLTLLNWPGYPSKYLPSTFQPPPLLELHLPGSKVERLWNGRKKFENLKEIDVSGSEYLIETPDFSEVRNLRRLILRNCGRLHKVHSSINRLERLVLLDMEGCFRWCMEYLTELHIDGTFINQLSPSITYLISLVLLNLRNCTKLYSLPAEMGSLSSLKTLILSGCKDLDQIPPSLGNVESLEELDIGGTSISVIPFLKNLRILNCERLKSNIWHSLASLPTHSFRSLKDLNLSDCNLVDEDIPDDFDLFSSLEILDLSSNHFESLPESIEQLINLKALYLNDCHKLKQVPRLPPSLQYVGGEKSLDMLRNSQGSSANYTTSYFASNPLLIPLVPSCQTLVGMENQVDNVRNFLDLESSDDVLVVGIFGLGGIGKTSIAEVVFNKIADKFEGSCFIYISKQNNLVSLQHQMLSQLLSKEIRILDDDHREQVVKDLLIDRKQIDKLVGSPDWFGPRSRVIITSRNRDVLHQLNYRDKVKEYNVELLSHESAYSLFCNNAFGDHSPSDKNEVCNEIVEKVGRFPLALKTIGSYLHNKELVVWNETLKRLCEVEQDFFDTILQRTQKNLHQP 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2888915 2893059 + Lsi08G001350.1 Lsi08g00135 668061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00135 1160 Pfam TIR domain 17 163 IPR000157 GO:0007165
Lsi08g00135 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 929 1141 IPR044974 GO:0006952
Lsi08g00135 1160 Gene3D - 13 196 IPR035897 -
Lsi08g00135 1160 SUPERFAMILY L domain-like 567 891 - -
Lsi08g00135 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 169 IPR035897 -
Lsi08g00135 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 929 1141 - -
Lsi08g00135 1160 Gene3D - 364 448 IPR042197 -
Lsi08g00135 1160 Gene3D - 1075 1157 IPR042197 -
Lsi08g00135 1160 Coils Coil 573 593 - -
Lsi08g00135 1160 ProSiteProfiles Leucine-rich repeat profile. 843 864 IPR001611 GO:0005515
Lsi08g00135 1160 Gene3D - 197 357 IPR027417 -
Lsi08g00135 1160 Gene3D - 915 1069 IPR027417 -
Lsi08g00135 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 713 896 - -
Lsi08g00135 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 34 695 - -
Lsi08g00135 1160 SUPERFAMILY Winged helix DNA-binding domain 437 535 IPR036390 -
Lsi08g00135 1160 SMART till_3 16 167 IPR000157 GO:0007165
Lsi08g00135 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 713 896 IPR044974 GO:0006952
Lsi08g00135 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 695 IPR044974 GO:0006952
Lsi08g00135 1160 Gene3D Ribonuclease Inhibitor 697 892 IPR032675 -
Lsi08g00135 1160 Gene3D Ribonuclease Inhibitor 530 696 IPR032675 -
Lsi08g00135 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 1149 IPR027417 -
Lsi08g00135 1160 PRINTS Disease resistance protein signature 744 760 - -
Lsi08g00135 1160 PRINTS Disease resistance protein signature 398 412 - -
Lsi08g00135 1160 PRINTS Disease resistance protein signature 229 244 - -
Lsi08g00135 1160 ProSiteProfiles TIR domain profile. 15 149 IPR000157 GO:0007165
Lsi08g00135 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 458 IPR027417 -
Lsi08g00135 1160 SMART LRR_typ_2 816 840 IPR003591 -
Lsi08g00135 1160 SMART LRR_typ_2 746 770 IPR003591 -
Lsi08g00135 1160 SMART LRR_typ_2 841 864 IPR003591 -
Lsi08g00135 1160 Pfam NB-ARC domain 224 424 IPR002182 GO:0043531
Lsi08g00135 1160 Pfam NB-ARC domain 935 1139 IPR002182 GO:0043531
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00135 - - - csv:101203641 1432.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00131 Lsi-Chr8:2814377 Lsi08g00135 Lsi-Chr8:2888915 0 dispersed
Lsi08g00132 Lsi-Chr8:2838622 Lsi08g00135 Lsi-Chr8:2888915 0 dispersed
Lsi08g00135 Lsi-Chr8:2888915 Lsi08g00138 Lsi-Chr8:2953865 5.54E-21 dispersed
Lsi08g00135 Lsi-Chr8:2888915 Lsi08g00136 Lsi-Chr8:2911328 1.28E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00135 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006110 0 3 0 0 0 1 0 1 2 4 0 0 0 2 8 0 0 0 0 0 4 0 0 0 0 7 2 2 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00135 Lsi_Chr08 FPKM 20.591141 20.925352 1.59622 2.606043 4.756072 4.199511 4.767185 0.0 0.0 0.0