Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00153 CTGTTGGAGCTCTTCTGCGTGATAGAAGAGCTGTTCAAGTGCCTACTAGTGGAAGAAATCATTTGTATAAAGTTTCTCTTTCTTTGGTTTTTATTCTGTGGGGACTTATCTTCCTCTTTAGCTTATGGTTCAGCCGTGGGGATGGCTGCCAAGGTATGCTTGCTCTGCACAAATTATTTTGATGTCCTTAGTGAAGATTTGATGAATTTCGAATTGGCTACTTCCGTGTTTCCTTCATATAATGGGATTTTGAGTAATTGTGCCGTTGTATTATCCCTTCTTTTATTTTCCAATCCGTTGTATTCCAATTTTGAATACGATGCTCTATATTCTTACATTCAAATAAAGAAACTATACAGATTAACTAATAAAAGCATAATTGGCAATCCTTCTCTAATGAAGTTCGAGCATAATTTGATACACAGTATACGCTTCTTAGTGGAAACTTTAATGTCCCTGAAGTTGGCTTCCTTTCCTAATTTGTTTTATTTTGTTACCACTCGTCAATCCATTATTTATTTACCAGACTTGATATTGATAGTAGTACCGATTGATTACCTATGCCCTTCCTTTCTTTGGGTTTCAGAAGGATCAGTTTTACATCCTGCTGATGTATCTACTTCAAATGAATCTAAATTGGAAAATAACAAGGACTCTGACATTTTATATGAACCTCCAAAGGGAGAAACTGATAGTACCATTCAATTAAACGATTCATGTTCAATTGATGCTACAAGCCCTGGTTCTGACAATGATATACTTTCAAGTGAAGAAAGTAGCAGTCATATACGACCTGCTACGAGGTTGCCTGAGGCTGAGAGCTCTAGCACTGGAGTAAAATCTGAAAACAAACCTGTCAAGGGAGATACCTCGTCAGAGACTGTTCTACTCGGCCTTGAAGAATTCAAAAGCAGAGCCTTTATATCCCGGAGTAAGTCTGAAACTGGCCAGGCTGGGAATACCATCCATAGAGTAGAACCTGGTGGTGCAGAGTACAATTACGCTTCAGCTTCAAAGGGAGCAAAGGTTTTGGCTTTCAACAAGGAAGCAAAGGGAGCTTCTAACATTTTAGGCAGGGACAAAGATAAGTACCTCAGAAATCCATGTTCTGCTGAAGAGAAATTTGTTGTCATAGAACTTTCAGAAGAAACCTTAGTAGTAACAATTGAAATTGCTAATTTTGAACACCATTCTTCCAACTTAAAAGAATTTGAGGTACATGGGAGTTTGGTCTATCCAACAGATGTTTGGTTCAAGCTCGGTAATTTTACTGCTCCAAATGCAAAGCATGCACATAGATTTGTTCTCAAGGACCCAAAATGGGTGAGATATTTAAAGTTGAATTTTCTTACCCATTATGGTTCAGAATTCTATTGCACACTCAGCACTGTGGAAGTTTACGGAATGGATGCTGTTGAGATGATGCTAGAGGATTTAATATCTGCTCAACATAAATCTTCTATATCAGATGAAGCTACTACTGAAAAGAGAGTAATTCCCTCCCAGTCTGGACCCAATGATGAAGGACAACATGGTAGAGAGTTGCAATCTCTTACTACTGAGGAAAGTGATGATGATGTTGATTTAGAACTTACAAAGAGTAACATACCTGATCCGGTTGAAGAATCGCACCATCAACAACCTGGCAGAATGCCTGGTGACACTGTTCTCAAAATTTTGACACAGAAAGTTCGTTCACTAGACCTAAGTTTATCTGTTTTGGAGCAGTATTTGGAGGACTTAACTTCCAAATATGGAAATATATTCAAAGAATTTGACAAAGATATAGAAAATAGTGATCTACTCATTGAGAAGACCCGAGAGGATATAAGAAATATTCTTAAAATCCAGGACAGCACAGATAAAGATCTTCGTGATCTCATTTCTTGGAAGTCCATTGTTTCCTTGCAGTTGGATAATCTGCAAAGGCATAATTCTATTCTCAGATCTGAGATTGAAAGGGTCCAGAAGAATCAGACTTCTCTGGAAAACAAAGGAATAGTTGTTTTTCTTGTGTGTCTCATTTTTTCGTCATTTGCTATTTTTAGATTATTTTTGCACATTGTTCTTAGAGTATATGAGAGAACAAATAATTCCAGGAAATTTTGTTGTATAAGCCCTTCCTGGTATCTATTGCTTTTGAGCTGTTTTTTTATCTATGGCCCCTCTTATTCAGATAAATACACATTCACAAGCATTGTATTGATGATGATGATGGAAGATCAAAGGCATGGAGAAGGAGAAATGGAGCATTATTCTAAGAAGCCATTTTTCTCATCTTTTTCTCCATTTTTGTTTGTGTTGATTTTACTTCCTTCACTTGTGCTAGTTTTTCTAGTTTGTAAGATTGATTTGGAGATTCCTTGGAGAAATGGCTTGGATAAAGACTTCTCAAGTTTGCAAAATTCACAACTTAATTCTTTTTCAAATAACATCTCTTCTCCTAAGTTGCTTGAACCAGCTGCTTTGGACCTCAAGGGACAAATTAAGAGATACAGTAAGTTGAAGAAAATAGAGGAGAAATTGGGAAGAGCAAGAGCAGCCATAAGAGAAGCTGCTCAACTTCATAATCTTACATCTATACATCATGATCCTGACTATGTTCCTACAGGCCCAATATACAGGAACCCAAATGCTTTCCACAGTTTTGTTACTGTGTTTTTGTTTTTGTTACGCTTTGATCTTGCTCGCACTATTGAAAAGAGCTATCTAGAAATGGAAAGGCTTTTGAAGATATATGTATACAAAGAAGGAGAACCTCCAATGTTTCATCAAGGTCCATGTAAGAGCATATATTCCACAGAAGGAAGGTTCATTCATGAAATGGAAAAGGGAAATTTGTATACAACCAATGATCCACATCAGGCCCTTCTCTATTTCCTCCCATTCAGTGTTGTCAATTTGGTTCAGTATCTTTATGTACCAAACTCTCATGAAGTTAATGCCATTGGAGTTGCAGTCTCAGATTACATCAATGTCATCTCTAATAAGCATTCTTTCTGGAATCGCAGTCTTGGTGCTGATCATTTTATGCTTTCCTGCCATGATTGGGGGCCACGTACCACTTCGTACGTTCCACTTTTATTCAATAACTCCATCAGGGTATTGTGTAACGCAAATGTTTCAGAAGGTTTCCGTCCCTCTAAAGATGCGTCGTTTCCTGAAATCCATCTTAGAACGGGAGAAATCGATGGGCTTCTTGGAGGTCTCTCGCCTTCTCGTCGAACTGTTCTTGCATTCTTTGCAGGTCGTCTACATGGCCATATAAGGTACCTACTCCTGCAGAACTGGAAGGAAAAAGATGAGGATGTGCTTGTTTACGACGAACTTCCAAGCGGAATATCGTACAATTCGATGTTGAAGAAGAGTAGGTTTTGTTTATGCCCTAGTGGGTATGAGGTAGCTAGTCCAAGGGTTGTGGAAGCCATTTATGCTGAATGTGTTCCTGTGTTGATATCTGAAAGCTATGTTCCTCCTTTCAGTGATGTTTTGAATTGGAAGTCATTTGCTGTGCAAATACAAGTAAAGGATATACCAAACATAAAAGAGATACTGAGAGGGATATCTAAAACTCAGTACTTGAGAATGCAGAGGAGAGTGAAGCAAGTACAGAAACATTTTGTGCTCAATGGAACTCCCAAGAGATTTGATGCTTTCCATATGATACTTCATTCTATCTGGCTCAGAAGGTTGAATATACACATTCAGGATTAA 3714 37.96 LLELFCVIEELFKCLLVEEIICIKFLFLWFLFCGDLSSSLAYGSAVGMAAKVCLLCTNYFDVLSEDLMNFELATSVFPSYNGILSNCAVVLSLLLFSNPLYSNFEYDALYSYIQIKKLYRLTNKSIIGNPSLMKFEHNLIHSIRFLVETLMSLKLASFPNLFYFVTTRQSIIYLPDLILIVVPIDYLCPSFLWVSEGSVLHPADVSTSNESKLENNKDSDILYEPPKGETDSTIQLNDSCSIDATSPGSDNDILSSEESSSHIRPATRLPEAESSSTGVKSENKPVKGDTSSETVLLGLEEFKSRAFISRSKSETGQAGNTIHRVEPGGAEYNYASASKGAKVLAFNKEAKGASNILGRDKDKYLRNPCSAEEKFVVIELSEETLVVTIEIANFEHHSSNLKEFEVHGSLVYPTDVWFKLGNFTAPNAKHAHRFVLKDPKWVRYLKLNFLTHYGSEFYCTLSTVEVYGMDAVEMMLEDLISAQHKSSISDEATTEKRVIPSQSGPNDEGQHGRELQSLTTEESDDDVDLELTKSNIPDPVEESHHQQPGRMPGDTVLKILTQKVRSLDLSLSVLEQYLEDLTSKYGNIFKEFDKDIENSDLLIEKTREDIRNILKIQDSTDKDLRDLISWKSIVSLQLDNLQRHNSILRSEIERVQKNQTSLENKGIVVFLVCLIFSSFAIFRLFLHIVLRVYERTNNSRKFCCISPSWYLLLLSCFFIYGPSYSDKYTFTSIVLMMMMEDQRHGEGEMEHYSKKPFFSSFSPFLFVLILLPSLVLVFLVCKIDLEIPWRNGLDKDFSSLQNSQLNSFSNNISSPKLLEPAALDLKGQIKRYSKLKKIEEKLGRARAAIREAAQLHNLTSIHHDPDYVPTGPIYRNPNAFHSFVTVFLFLLRFDLARTIEKSYLEMERLLKIYVYKEGEPPMFHQGPCKSIYSTEGRFIHEMEKGNLYTTNDPHQALLYFLPFSVVNLVQYLYVPNSHEVNAIGVAVSDYINVISNKHSFWNRSLGADHFMLSCHDWGPRTTSYVPLLFNNSIRVLCNANVSEGFRPSKDASFPEIHLRTGEIDGLLGGLSPSRRTVLAFFAGRLHGHIRYLLLQNWKEKDEDVLVYDELPSGISYNSMLKKSRFCLCPSGYEVASPRVVEAIYAECVPVLISESYVPPFSDVLNWKSFAVQIQVKDIPNIKEILRGISKTQYLRMQRRVKQVQKHFVLNGTPKRFDAFHMILHSIWLRRLNIHIQD 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3178098 3185553 + Lsi08G001530.1 Lsi08g00153 668079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00153 1237 Pfam Exostosin family 908 1187 IPR040911 -
Lsi08g00153 1237 ProSiteProfiles SUN domain profile. 304 471 IPR012919 -
Lsi08g00153 1237 SUPERFAMILY Galactose-binding domain-like 353 467 IPR008979 -
Lsi08g00153 1237 Pfam Sad1 / UNC-like C-terminal 347 469 IPR012919 -
Lsi08g00153 1237 PANTHER OS07G0188700 PROTEIN 814 1235 - -
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 230 263 - -
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 211 225 - -
Lsi08g00153 1237 Coils Coil 835 855 - -
Lsi08g00153 1237 Gene3D - 351 479 - -
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 270 290 - -
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 487 527 - -
Lsi08g00153 1237 Coils Coil 638 665 - -
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 487 513 - -
Lsi08g00153 1237 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 814 1235 IPR004263 GO:0006486|GO:0016757
Lsi08g00153 1237 MobiDBLite consensus disorder prediction 203 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00153 - - - csv:101220988 913.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01266 Lsi-Chr1:10908499 Lsi08g00153 Lsi-Chr8:3178098 1.16E-171 dispersed
Lsi03g00475 Lsi-Chr3:5397938 Lsi08g00153 Lsi-Chr8:3178098 0 dispersed
Lsi05g00792 Lsi-Chr5:11497295 Lsi08g00153 Lsi-Chr8:3178098 8.04E-68 dispersed
Lsi08g00153 Lsi-Chr8:3178098 Lsi08g01216 Lsi-Chr8:20662295 2.98E-126 dispersed
Lsi09g00443 Lsi-Chr9:4674639 Lsi08g00153 Lsi-Chr8:3178098 1.08E-83 dispersed
Lsi08g00153 Lsi-Chr8:3178098 Lsi06g01010 Lsi-Chr6:20196167 2.09E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005606 0 3 0 0 0 1 3 1 1 1 1 1 2 1 2 2 1 0 3 1 1 2 3 1 1 1 2 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00153 Lsi_Chr08 FPKM 10.24735 12.11801 25.384739 28.097769 16.754023 16.507931 15.964221 3.958729 4.485027 4.203354