Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00157 ATGGTTACTGCAGCGGTTGAGAATGGCGGAAGCGAAATGGTAATTGACGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATGCTGATTTTTTCAAATGGATGTCTTATGGAAATGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGGCGTGGTGTTCATTGTTGGGTTTGTGATGGCAAAGCTAGAAGGTTGTCTAACGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATACCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCGTACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTCTATAGTCAAAAGATTTTCTCTACTGAGGAAAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGAGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTCAACTCAGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTATCCTAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATTTGTGTCCCTATCGACCCTGAAAACTGTGATAAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGGTAAAACAACAAGAAGGCATATAG 777 40.28 MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGNDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQEGI 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3232245 3237437 - Lsi08G001570.1 Lsi08g00157 668083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00157 258 SUPERFAMILY Prim-pol domain 57 253 - -
Lsi08g00157 258 Pfam DNA primase small subunit 56 234 IPR002755 GO:0003896|GO:0006269
Lsi08g00157 258 PANTHER DNA PRIMASE SMALL SUBUNIT 26 55 - -
Lsi08g00157 258 PANTHER DNA PRIMASE SMALL SUBUNIT 26 55 IPR014052 GO:0003896|GO:0006269
Lsi08g00157 258 PANTHER DNA PRIMASE SMALL SUBUNIT 57 253 IPR014052 GO:0003896|GO:0006269
Lsi08g00157 258 PANTHER DNA PRIMASE SMALL SUBUNIT 57 253 - -
Lsi08g00157 258 Gene3D DNA primase, PRIM domain 56 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00157 Lsi-Chr8:3232245 Lsi08g00158 Lsi-Chr8:3246858 7.14E-25 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00157 K02684 - csv:101203146 379.793