Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00158 ATGGTAATTGACGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATGCTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGCAAGCATCCGGGCAGTGACCAATCCTATTTTGGCCGAAGAGAGTTTTCATTCACCTTGGATAATGATATTTATCTGCGATTCCAATCTTTCAACAGTCTATCAGAAATGGAAAATTCAATCAAGGAAAAATGTCCATTTAAAATTGATATTGGGCCTCCTGCAAAGAGACATGCATATGCTGGCGATAATGTATTTACTCCAGTGGAGAGAGAGCTGGTTTTTGATATCGATATGACCGATTACGATGATGTTAGATATTGTTGTTCTGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACAGCTGCTATCAAAATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGGCGTGGTGTTCATTGTTGGGTTTGTGATGGCAAAGCTAGAAGGTAAAGCTAGTAATCAAATTGTTGAATTTGCAGTCTCAAATTCCCACCATCACTGCCACAGGTTGTCTAACGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATACCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCGTACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTCTATAGTCAAAAGATTTTCTCTACTGAGGAAAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGAGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTCAACTCAGTAAGATGGGAACAACTGAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTATCCTAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATTTGTGTCCCTATCGACCCTGAAAACTGTGATAAGTTTGATCCTACTACTGTGCCAACTGTTGCC 1146 39.44 MVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKMTLDLTTFYGYLVVGVVFIVGFVMAKLEGKASNQIVEFAVSNSHHHCHRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSVRWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3246858 3251531 - Lsi08G001580.1 Lsi08g00158 668084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00158 382 SUPERFAMILY Prim-pol domain 20 156 - -
Lsi08g00158 382 PANTHER DNA PRIMASE SMALL SUBUNIT 29 381 IPR014052 GO:0003896|GO:0006269
Lsi08g00158 382 Pfam DNA primase small subunit 120 366 IPR002755 GO:0003896|GO:0006269
Lsi08g00158 382 PANTHER DNA PRIMASE 29 381 - -
Lsi08g00158 382 Gene3D DNA primase, PRIM domain 192 382 - -
Lsi08g00158 382 Gene3D DNA primase, PRIM domain 11 170 - -
Lsi08g00158 382 SUPERFAMILY Prim-pol domain 198 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00157 Lsi-Chr8:3232245 Lsi08g00158 Lsi-Chr8:3246858 7.14E-25 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00158 K02684 - csv:101203146 644.039