Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00162 ATGGAAGGAAGTGAAGAAGAAGAAGGATTGGAAATGTCTTCGTCCAGTGTTTGTTCCGAAATCTCAACCCAACAACTTCCATGGAAGCACAGAATTATTCTTCGCTTCGCCGCTCTACTCTTCAACACTTCTCTCCGATCAGATCTCACCGTCAATCGTTGGCTTCTCAATTTCATCGACCCCAAAATCCCTCCCAATCCCAATTCAATCCACGCCGTTTCCTCTTCCGATCTCACTATCGACAGTTCTCGTCACCTCTTCCTTCGAATCTTAACCCCCACCGCCGCCGCCGACTCTCTCTCCCCGCCCCTCATTTTCTACTTCCACGGCGGCGGCTTCGCCTTCGGTTCCCCCGACGCCACTTCAATGGACATGGCTGCCCGCCGCTTCGCCAAAGAACTACGCGCCGTCGTAATCTCCGTCAACTACCGCCTCACTCCTGAGTTCCGATTCCCCTGCCAATACGACGACGGATTCGACGCTTTGAAATTCATTGACGAAATGGACGACGGCGCATTGCTGGGGAGGGCAGACCTGAGCCGTTGCTTTATTTTGGGGGAAAGTGCCGGGGGGAATCTAGGGCACCACGTGGCAGTGAGAGCGAGCGAGTACGAGTTCAAGAGAGTGAAGGTGGTTGGATTTATAGCGTCGCAGCCGTTTTTCGGTGGAGAGGAAAGAACAGAGTCGGAGAATCGACTGTGTAAGCAGCTTCCGTTGACTCTGAACATGACGGATTGGTTCTGGAGGGCGTTTTTGCCGGCCGGGGAAAATCGAGACCACGCGGCGGCGAATGTGAATGGACCGAATGGAAGGGATATATCGGGAGTGAAAAATTTTCCGGCGACGGTGATTTTTGGCGGAGGATTAGATCTGCTGATTGATCGACAGAAGTGTTACTATGAGGGGCTGAAGAGAATGGGAAAGAATGTGAAGTTGGTGAAGCCATTGAAGCTGACCAATTGA 963 52.34 MEGSEEEEGLEMSSSSVCSEISTQQLPWKHRIILRFAALLFNTSLRSDLTVNRWLLNFIDPKIPPNPNSIHAVSSSDLTIDSSRHLFLRILTPTAAADSLSPPLIFYFHGGGFAFGSPDATSMDMAARRFAKELRAVVISVNYRLTPEFRFPCQYDDGFDALKFIDEMDDGALLGRADLSRCFILGESAGGNLGHHVAVRASEYEFKRVKVVGFIASQPFFGGEERTESENRLCKQLPLTLNMTDWFWRAFLPAGENRDHAAANVNGPNGRDISGVKNFPATVIFGGGLDLLIDRQKCYYEGLKRMGKNVKLVKPLKLTN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3342537 3343912 + Lsi08G001620.1 Lsi08g00162 668088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00162 320 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 105 121 IPR002168 GO:0016787
Lsi08g00162 320 PANTHER ACETYL ESTERASE 21 314 - -
Lsi08g00162 320 SUPERFAMILY alpha/beta-Hydrolases 56 313 IPR029058 -
Lsi08g00162 320 Pfam alpha/beta hydrolase fold 105 313 IPR013094 GO:0016787
Lsi08g00162 320 Gene3D alpha/beta hydrolase 8 314 IPR029058 -
Lsi08g00162 320 PANTHER ARYLACETAMIDE DEACETYLASE 21 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00162 - - - csv:101202912 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00162 Lsi-Chr8:3342537 Lsi10g00695 Lsi-Chr10:9747201 0 dispersed
Lsi08g00162 Lsi-Chr8:3342537 Lsi08g00164 Lsi-Chr8:3369661 1.39E-145 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00162 Lsi_Chr08 FPKM 7.016052 8.898519 4.394791 5.505869 4.386551 3.027102 4.880117 14.820278 13.047278 14.300492