Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00164 ATGTCATCTTCCATTTCTGGTAGTGAAATTTCAAGCTCTCAACTTCCATGGAAGCACCGTCTATTCCTTCGACTCGGTACTATACTCACCGACGTTTGTTGCCGATCCAATTTCACCGTTAACCGTTGGCTCACCGCAATCCTCGACCGGAAAATCCCCCCCTCTACCAAACCAATCGATGGCGTCTCCTCTTTCGACCTCACTATCGACACTTCCCGCAACCTTTGGGTTCGAATCTTCAATCCCACTATCCACGGTGAAGATTCGAATCTTCAATCTTTGCCGGTTATTTTCTATTACCACGGCGGCGGCTTCACCTTCTCTTACGCCGATTCAGCCCTCTCCCACATGTCCGCTCACCAATTCGCCAAACAATTGCCCGCCGTTGTAATCTCCGTCAACTACCGCCTCGCTCCGGAGTTCCGGTTCCCCTGCCAATACGACGACGGATTCGACGCCTTGAAATTCATCGACGAAACAGAGGAGGGAATCCTACCGGCAAGGGCGGATCTGAGCCGTTGCTTCGTTTTGGGGGAAAGCGCCGGAGGAAATCTAGGGCACCACGTGGCAGTGAGAGCAAGCGAGTACGAGTTCAAGAAAGTGAAAGTGAGTGGGTTTATAGCGTCACAGCCGTTTTTCGGCGGAGAGGAGAGAACAGAGTCGGAGATTCGGCTGCGTAATCAGCCGCCGTTGAGTCTGAAAATGACGGATTGGTTCTGGAAGGCGTTTTTGCCGGAAGGGGAAGATCGAGATCACGCCGCGGCGAATGTGTTCGGGCCAAACGGAAGGGATGTTTCGGAGGTGGTGAAGTTTCCGGCGACGGTGGTTTTGGTGGGAGAGTTGGATTTGCTGCAGGATGGGCAGAGGAGGTATTATGAAGGGTTGAAGAGAATGGGGAAGGATGTGAAAATGGTGGAATTTCCAAATGCCATTCATGGATTCTTTGTATTCAAGGATCTGCCACAATATTCTTCCATGATTCAAGAGATGAAGGATTTCATTGCCACACAATTCCATAACTCTCCATTAATTGTTCTTGCTTCTCCCTAA 1050 50.48 MSSSISGSEISSSQLPWKHRLFLRLGTILTDVCCRSNFTVNRWLTAILDRKIPPSTKPIDGVSSFDLTIDTSRNLWVRIFNPTIHGEDSNLQSLPVIFYYHGGGFTFSYADSALSHMSAHQFAKQLPAVVISVNYRLAPEFRFPCQYDDGFDALKFIDETEEGILPARADLSRCFVLGESAGGNLGHHVAVRASEYEFKKVKVSGFIASQPFFGGEERTESEIRLRNQPPLSLKMTDWFWKAFLPEGEDRDHAAANVFGPNGRDVSEVVKFPATVVLVGELDLLQDGQRRYYEGLKRMGKDVKMVEFPNAIHGFFVFKDLPQYSSMIQEMKDFIATQFHNSPLIVLASP 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3369661 3370710 - Lsi08G001640.1 Lsi08g00164 668090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00164 349 Gene3D alpha/beta hydrolase 4 342 IPR029058 -
Lsi08g00164 349 PANTHER ARYLACETAMIDE DEACETYLASE 10 337 - -
Lsi08g00164 349 SUPERFAMILY alpha/beta-Hydrolases 37 336 IPR029058 -
Lsi08g00164 349 Pfam alpha/beta hydrolase fold 97 315 IPR013094 GO:0016787
Lsi08g00164 349 PANTHER ACETYL ESTERASE 10 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00164 - - - cmo:103498754 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02205 Lsi-Chr2:28491865 Lsi08g00164 Lsi-Chr8:3369661 3.25E-119 dispersed
Lsi03g00471 Lsi-Chr3:5337750 Lsi08g00164 Lsi-Chr8:3369661 7.28E-107 dispersed
Lsi06g00168 Lsi-Chr6:1847552 Lsi08g00164 Lsi-Chr8:3369661 1.00E-77 dispersed
Lsi08g00164 Lsi-Chr8:3369661 Lsi10g00695 Lsi-Chr10:9747201 3.53E-162 dispersed
Lsi09g01911 Lsi-Chr9:27945344 Lsi08g00164 Lsi-Chr8:3369661 1.65E-46 dispersed
Lsi09g01912 Lsi-Chr9:27947198 Lsi08g00164 Lsi-Chr8:3369661 2.89E-25 dispersed
Lsi08g00162 Lsi-Chr8:3342537 Lsi08g00164 Lsi-Chr8:3369661 1.39E-145 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00164 Lsi_Chr08 FPKM 42.576687 43.272167 23.170986 27.056423 9.2597 3.986636 6.974775 46.974667 44.416019 58.448746