Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00175 ATGGCGATCTCCACCTCTAGACTTGGAAGAAGGCGTTGGATTGGGCAAAGAACATGGCGTAATCGATTCCCCTTCAGATTCTCTTCCCGACGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTGATCGCAATTCTGCCTCCCATTTACTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGGGACTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGACTCATCTAAGGCTTTCCCAAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCAGATGGAGTCTTATTTGCACTTCATGACAGGTATTTATCAAAACTGTTTACAGCCAGTCACCTTATCATGTTGGTCCCTAAATCAGTTAATCAGGATAGCCCTTGTCAATTTTCTTCTCGTAATTGA 462 44.59 MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLFTASHLIMLVPKSVNQDSPCQFSSRN 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3614502 3615236 + Lsi08G001750.1 Lsi08g00175 668101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00175 153 Gene3D Phosphatidylinositol (PI) phosphodiesterase 59 144 IPR017946 GO:0006629|GO:0008081
Lsi08g00175 153 ProSiteProfiles GP-PDE domain profile. 73 153 IPR030395 GO:0006629|GO:0008081
Lsi08g00175 153 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD4 10 130 IPR044236 -
Lsi08g00175 153 Pfam Glycerophosphoryl diester phosphodiesterase family 82 131 IPR030395 GO:0006629|GO:0008081
Lsi08g00175 153 SUPERFAMILY PLC-like phosphodiesterases 71 129 IPR017946 GO:0006629|GO:0008081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00175 - - - csv:101219565 212.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1742 Blo01g01684 . . . Bpe02g00257 . . Bma01g02451 . . . . . . . . . . . . . . . . Cla08g00173 . Cec08g0078 Cco08g0238 . Cmu08g0165 Cre08g0156 . . . . . . . Cme09g00119 . . Bda11g00919 . . . . . . . Cmo09g01209 . . . Car09g01078 . . Bhi06g00121 . . . . . . . . . . . . . Lsi08g00175 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005771 1 8 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00175 Lsi_Chr08 FPKM 20.2432 23.158436 28.555807 25.352652 6.983221 5.29851 8.197418 15.041391 15.678338 20.524277