Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00177 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGGCCAGGTCCAATTTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGTCAATAACAATAACAACTCTACATCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGACACACTTTGTTCAGTATGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCCTGTGGGCATGTATTTCACCTGGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCTTCTCACCGTCGTCTCAACCACCGCATATTCAGATCGACATGGGACTCGAATCGTCAAACGAACCACAATGCGAAGAAGCACCTCCTCCACAAACTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.09 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAVNNNNNSTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVFSPSSQPPHIQIDMGLESSNEPQCEEAPPPQTTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3626634 3629415 + Lsi08G001770.1 Lsi08g00177 668103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00177 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lsi08g00177 197 SUPERFAMILY RING/U-box 93 162 - -
Lsi08g00177 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 22 159 - -
Lsi08g00177 197 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 22 159 - -
Lsi08g00177 197 SMART ring_2 109 150 IPR001841 -
Lsi08g00177 197 Pfam Ring finger domain 109 151 IPR001841 -
Lsi08g00177 197 MobiDBLite consensus disorder prediction 172 197 - -
Lsi08g00177 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00177 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - csv:101219324 349.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00177 Lsi-Chr8:3626634 Lsi09g00163 Lsi-Chr9:1707890 3.61E-28 dispersed
Lsi08g00177 Lsi-Chr8:3626634 Lsi09g01100 Lsi-Chr9:17598438 4.59E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1752 . . . . . . . . . . Cma01g00880 . Car01g00804 . . Cpe06g00948 . . . . . . . . Cla08g00174 . Cec08g0077 Cco08g0239 . Cmu08g0166 Cre08g0157 . . . . . . . Cme09g00120 . . . . . . . . Sed01g3808 Cmo01g00922 Cmo09g01208 . . . Car09g01077 . Cpe02g00984 Bhi06g00114 Tan10g1839 Cmetu09g1280 . . . . . . . . . . . Lsi08g00177 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011425 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00177 Lsi_Chr08 FPKM 8.097505 10.060253 13.20784 14.828239 7.54491 7.760915 8.512439 12.619701 11.655215 12.697916