Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00178 ATGTTTTGGCTCTTTCATCATCCCTTTCCCCTTTATGCTTTAGTTTTGGAAGGAGGGATGTCTAGCTTTGAATCCTTGTTCGTCCCAAGTTTGGACGGTGAAGTTCTTTGTGTGGTTTGCATTGAAGGGTTAACACCTTGGATCGGATCTCGGCTAGAGGGTCTTTGGAGGTCGGGCTGGAGCCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGGGTTGACATTCCAGATTCTATATCTAGACAGAATTTTACTCATACAGGGTCAAGTGGGTTGTTCCTCACAAAGAATGCAAGTGATCGAGTTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTAATGCTGTCATTTGTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAGAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAACCTAGTCCTGGCATGGGTAAGGTTTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 900 43.78 MFWLFHHPFPLYALVLEGGMSSFESLFVPSLDGEVLCVVCIEGLTPWIGSRLEGLWRSGWSQLFEQIVCKKVGHVGHPLGSHPFSSRVDIPDSISRQNFTHTGSSGLFLTKNASDRVYASYNVYKGKAGLSMMPCLPTFTKLESGSLVIDRRGSVMLSFVPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSSAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPSPGMGKVFQPNKVDREALSLEWER 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3653988 3665131 - Lsi08G001780.1 Lsi08g00178 668104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00178 299 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 94 299 - -
Lsi08g00178 299 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 94 299 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00178 299 Pfam Whirly transcription factor 123 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00178 299 SUPERFAMILY ssDNA-binding transcriptional regulator domain 114 298 IPR009044 GO:0003677|GO:0006355
Lsi08g00178 299 Gene3D Transcriptional Coactivator Pc4; Chain A 110 277 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00178 Lsi-Chr8:3653988 Lsi08g00736 Lsi-Chr8:15698952 3.22E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25710 PF08536 Whirly 1.90E-53 CL0609 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00178 - - csv:101219085 374.4