Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00178 | ATGTTTTGGCTCTTTCATCATCCCTTTCCCCTTTATGCTTTAGTTTTGGAAGGAGGGATGTCTAGCTTTGAATCCTTGTTCGTCCCAAGTTTGGACGGTGAAGTTCTTTGTGTGGTTTGCATTGAAGGGTTAACACCTTGGATCGGATCTCGGCTAGAGGGTCTTTGGAGGTCGGGCTGGAGCCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGGGTTGACATTCCAGATTCTATATCTAGACAGAATTTTACTCATACAGGGTCAAGTGGGTTGTTCCTCACAAAGAATGCAAGTGATCGAGTTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTAATGCTGTCATTTGTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAGAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAACCTAGTCCTGGCATGGGTAAGGTTTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA | 900 | 43.78 | MFWLFHHPFPLYALVLEGGMSSFESLFVPSLDGEVLCVVCIEGLTPWIGSRLEGLWRSGWSQLFEQIVCKKVGHVGHPLGSHPFSSRVDIPDSISRQNFTHTGSSGLFLTKNASDRVYASYNVYKGKAGLSMMPCLPTFTKLESGSLVIDRRGSVMLSFVPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSSAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPSPGMGKVFQPNKVDREALSLEWER | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3653988 | 3665131 | - | Lsi08G001780.1 | Lsi08g00178 | 668104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00178 | 299 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 94 | 299 | - | - | |
Lsi08g00178 | 299 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 94 | 299 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Lsi08g00178 | 299 | Pfam | Whirly transcription factor | 123 | 257 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Lsi08g00178 | 299 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 114 | 298 | IPR009044 | GO:0003677|GO:0006355 | |
Lsi08g00178 | 299 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 110 | 277 | IPR009044 | GO:0003677|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00178 | Lsi-Chr8:3653988 | Lsi08g00736 | Lsi-Chr8:15698952 | 3.22E-43 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25710 | PF08536 | Whirly | 1.90E-53 | CL0609 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00178 | - | - | csv:101219085 | 374.4 |