Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00178 ATGTTTTGGCTCTTTCATCATCCCTTTCCCCTTTATGCTTTAGTTTTGGAAGGAGGGATGTCTAGCTTTGAATCCTTGTTCGTCCCAAGTTTGGACGGTGAAGTTCTTTGTGTGGTTTGCATTGAAGGGTTAACACCTTGGATCGGATCTCGGCTAGAGGGTCTTTGGAGGTCGGGCTGGAGCCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGGGTTGACATTCCAGATTCTATATCTAGACAGAATTTTACTCATACAGGGTCAAGTGGGTTGTTCCTCACAAAGAATGCAAGTGATCGAGTTTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTAATGCTGTCATTTGTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAGAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAACCTAGTCCTGGCATGGGTAAGGTTTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 900 43.78 MFWLFHHPFPLYALVLEGGMSSFESLFVPSLDGEVLCVVCIEGLTPWIGSRLEGLWRSGWSQLFEQIVCKKVGHVGHPLGSHPFSSRVDIPDSISRQNFTHTGSSGLFLTKNASDRVYASYNVYKGKAGLSMMPCLPTFTKLESGSLVIDRRGSVMLSFVPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSSAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPSPGMGKVFQPNKVDREALSLEWER 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3653988 3665131 - Lsi08G001780.1 Lsi08g00178 668104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00178 299 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 94 299 - -
Lsi08g00178 299 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 94 299 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00178 299 Pfam Whirly transcription factor 123 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00178 299 SUPERFAMILY ssDNA-binding transcriptional regulator domain 114 298 IPR009044 GO:0003677|GO:0006355
Lsi08g00178 299 Gene3D Transcriptional Coactivator Pc4; Chain A 110 277 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00178 - - - csv:101219085 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00178 Lsi-Chr8:3653988 Lsi08g00736 Lsi-Chr8:15698952 3.22E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1756 . . . Bda03g00364 . Bpe04g00326 . . . . Cma01g00881 . Car01g00805 . . . . . . . . . . . Cla08g00178 . Cec08g0075 . . Cmu08g0168 Cre08g0158 . . . . . . . Cme09g00121 . . . . . . . . Sed08g1728 Cmo01g00923 . . . . . . Cpe02g00983 Bhi06g00113 Tan10g1838 Cmetu09g1050 . . . . . . . . . . . Lsi08g00178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00736 . 46 288 Whirly Transcription Factor Family AT1G14410 65.7 1.4e-87 319.7
Lsi08g00178 . 114 273 Whirly Transcription Factor Family AT1G71260 67.5 1.5e-59 226.5
Lsi08g00736 . 46 288 Whirly Transcription Factor Family AT2G02740 64.8 9.3e-87 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25710 PF08536 Whirly 1.90E-53 CL0609 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00178 Lsi_Chr08 FPKM 5.680957 8.408446 19.740673 23.096037 3.109569 4.15219 3.327122 25.14992 26.851387 28.993776