Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00190 ATGGCTACTGAGAGACTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCGAACTCGGCGTCCGTCAATGGCCCAAGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACGTATTCGGACAAAGAGACCTGCTATCTGCTAGAGGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCTGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG 291 50.17 MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4022600 4024856 - Lsi08G001900.1 Lsi08g00190 668116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00190 96 PANTHER OS04G0445200 PROTEIN 1 95 - -
Lsi08g00190 96 Pfam EutQ-like cupin domain 20 93 IPR008579 -
Lsi08g00190 96 PANTHER OS04G0445200 PROTEIN 1 95 - -
Lsi08g00190 96 SUPERFAMILY RmlC-like cupins 18 93 IPR011051 -
Lsi08g00190 96 CDD cupin_TM1112-like 27 95 - -
Lsi08g00190 96 Gene3D Jelly Rolls 1 95 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00190 K06995 K06995; uncharacterized protein - csv:101218376 198.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00190 Lsi-Chr8:4022600 Lsi09g01806 Lsi-Chr9:26835246 1.62E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1783 . . . . . . . Bma01g02473 . . . Cma09g01208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00190 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010991 1 1 1 2 0 0 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00190 Lsi_Chr08 FPKM 68.433922 72.103073 62.713207 64.426926 76.811356 81.061111 74.557106 72.31353 78.795097 75.482864