Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00191 ATGGCTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTCGGCGTCTCTGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCAGCTAGGTCAGCTCCCTCTGCTTCTAGCCCCGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCCGCCGCACCATCCAAGCCAAAGCCCTCCGCCGTCTCTCCGGTCAATGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCAGACGGCCTGTTGGACCGATCGGAGATCCCCGAGTACTTGAACGGAGAAGTGCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAATACCAAGCATTTGAATTGATTCATGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAAGCCTTTAACAAATTTGGTGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAATATTCCCATCAACCTCATTGTCGCCGTCATTGCCGAGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAGGCAGCGATCTTGAAGGTGAAGGAGATAAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGACCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 828 52.05 MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAENFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4030824 4033303 - Lsi08G001910.1 Lsi08g00191 668117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00191 275 Pfam Chlorophyll A-B binding protein 93 238 IPR022796 -
Lsi08g00191 275 SUPERFAMILY Chlorophyll a-b binding protein 73 265 - -
Lsi08g00191 275 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 275 IPR001344 GO:0009765|GO:0016020
Lsi08g00191 275 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 275 - -
Lsi08g00191 275 Gene3D Chlorophyll a/b binding protein domain 80 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00191 Lsi-Chr8:4030824 Lsi11g01355 Lsi-Chr11:22168602 1.10E-57 dispersed
Lsi08g00191 Lsi-Chr8:4030824 Lsi10g01537 Lsi-Chr10:19772142 3.44E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00191 K08916 - csv:101218137 495.352