Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00192 ATGGCAACCGCAAAAATGCTGTGGAATTCCGCTAAGATTCTTGGATTTCCTGTTCCGATAGCAAGCAACCGTAGATGGGCAAGGTCTGGTTGTACATTTCGATTTCGGCATCATCCATTCGAGGGCTCTTTCTCCTTCAACTCGTTGCGTTCTAATTGCAGCTCTAGTAGTGCAAATTCAGTATGGAATGGCAAAGAGTACTTAGTTTTGTCCGACGAAGAGCTGATGAGACAGTGCGAAATGGACACGTTCAAGGCGTCAGGTCCCGGTGGTCAGCACCGCAACAAGCGCGAGTCTGCTGTTCGTTTGAAGCACATTCCCACTGGTATCACTGCTCAGGCTGTCGAGGATCGATCGCAGCATAAGAATCGAGCGAGTGCCTTAACTCGCCTACGTGCTCTCTTGGCCCTAAAAGTCAGGAACCCTGTGGATCTTGAATATTATTCCCCTCCTCCAGAGCTTCTTCAAATTCTCCCTCTTAAGTCCACTATTAGGCCACCGGAATGTGGCCCTCAAATTGGTCCTAACAATTCTAAGTTTCTGCCGGGCATGCAAGCTCTACTGGATCTAATTTCCACACTTGATGGTTCTGTATCAGACACGGCTAAGCTTTTAGGGAAGACTAGTGGAAGGGGTATCATTACTAGGTTTATAGTTTTTGTAGCAATGAACAAGAATGGTAATTTTGTCAAGGGCATGAGGGAAGCGAGTTTGGACCTCTGGAAGATGTTAACCACTGGTGCTCTTTCAAGGTTAATCCTATCCGATGATGCTCTTAGAATGGCTGTAAATGATATCAGGATGTCCAAGGTAACACCATACTATTTTTGA 831 46.09 MATAKMLWNSAKILGFPVPIASNRRWARSGCTFRFRHHPFEGSFSFNSLRSNCSSSSANSVWNGKEYLVLSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALTRLRALLALKVRNPVDLEYYSPPPELLQILPLKSTIRPPECGPQIGPNNSKFLPGMQALLDLISTLDGSVSDTAKLLGKTSGRGIITRFIVFVAMNKNGNFVKGMREASLDLWKMLTTGALSRLILSDDALRMAVNDIRMSKVTPYYF 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4045145 4047279 - Lsi08G001920.1 Lsi08g00192 668118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00192 276 Pfam RF-1 domain 78 136 IPR000352 GO:0003747|GO:0006415
Lsi08g00192 276 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 43 272 - -
Lsi08g00192 276 Gene3D - 36 142 - -
Lsi08g00192 276 PANTHER LD18447P 43 272 - -
Lsi08g00192 276 SUPERFAMILY Release factor 77 140 IPR045853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00192 - - - csv:101217430 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01016 Lsi-Chr7:15091321 Lsi08g00192 Lsi-Chr8:4045145 2.05E-08 dispersed
Lsi07g01018 Lsi-Chr7:15102707 Lsi08g00192 Lsi-Chr8:4045145 6.74E-08 dispersed
Lsi08g00192 Lsi-Chr8:4045145 Lsi02g02366 Lsi-Chr2:30316920 8.81E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1791 Blo01g01700 . . . Bpe02g00244 . . Bma01g02476 . . Cma01g00891 . Car01g00813 . . . . . . . . . . . Cla08g00197 . Cec08g0338 Cco08g0268 . Cmu08g0183 Cre08g0172 . . . . . . . Cme09g00134 . . Bda11g00904 . . . . . Sed10g1662 Cmo01g00936 . . . . . . Cpe02g00974 Bhi06g00095 Tan10g1820 Cmetu09g1691 . . . . . . . . . . . Lsi08g00192 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010990 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00192 Lsi_Chr08 FPKM 13.838502 14.046473 8.867418 8.904689 13.958093 13.914213 12.087484 10.157567 10.06531 9.387355