Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00193 ATGTTAATGATTTCTTTAACCAAAAGAGAGAAAGGTTATACGTGTATATTTTTGAGTCACACAGAAACCGATTGGGTCCCACTGAATTTGGAGCTGTGGATGGTTGCTACTACGCTCCTCTCAATCCATCCTCATCTTCATCCTCTCCATTCTCAACTCTTCAACGATCCAATGTTTGCTGCAACGCTCGGATCTGTTTCCGCTTATTCCTTTCTCTCACAGTTTGCCTCTATTGATGCTTCTCACGCCCCTTCAACCTCCACCTCCACCTCCTCCCTTCTACTTCACACGCCCTTCTCTAGACGACCTTTATCTCCGCCACCGGAATCAGTTCGACCTGCTCGGGTGCATGTGAATTTGCAGCAAATAACTCAGAGAAATAGGAACTGTTTTATCAGACACAGGAACTGGGCAGGACGGTTTGTTGGTCCCAACAAAAATTCATCTACAAGAGCAGCTGTGATTACTGCAACGTCCTCAGCTTCTGTGTGCATTGGGCCTGCTCTGGAGCAACCTCAATCAAGTTCAAGTTCTCCTGTCGTCCTTTTAGTTCATGGATTTGGAGCTTCTATTCCCCATTGGCGCAGGAATATTCCCACATTGTCTCAATATTCAACTGTCTATGCCATCGACCTTCTTGGCTTTGGTGCTTCCGATAAGCCTGCCGGCTTTGCATATACCATGGAAACATGGGCAAATTTAATATTAGATTTTGTGGATCAAGTTATTAAGAAGCCAACTGTTCTAGTGGGTAACTCGGTGGGAAGCCTTGCTTGCGTGATTGCTGCTTCAGATTCCAGTAGAAATCTAGTTCGAGGACTTGTGCTCTTAAACTGTGCTGGTGGTATGAACAATAAAGCAATTGTCGACGATTGGAGGATCAAACTGTTATTACCATTGCTTTGGCTGTTCGATTTCTTATTGAACCAACGAATAATTGCTTCTGCGCTGTTTGAGCGTGTGAAAAAGAGAGAGACCCTGAGGAACATTTTGTCATCCGTATATGGAAACAAGGAAAGTGTGGATGAAGATCTGATAGACATAATTGTGGAACCAGCAAACGACAAAGGAGCGCTTGATGCTTTCGTTTCAATTGTTACGGGGCCACCAGGGCCGAGTCCGGTGCAACTAATGCCAAAAATTTCTGTGCCTGTTTTGATTTTGTGGGGAGATGAAGATCCATTCACGCCACTTGATGGCCCTGTTGGGAAGTACTTCAGGGAGTTAAGTGTGGAAGTTCCAAATGTCAGTCTTTTTGTGTTGAAAGGAGTAGGACATTGTCCCCATGATGATAGGCCTGAATTAGTACATGAAAAGCTTCTTCCATGGCTGGCTCAGCTTCCTGCTTTGTAG 1353 44.79 MLMISLTKREKGYTCIFLSHTETDWVPLNLELWMVATTLLSIHPHLHPLHSQLFNDPMFAATLGSVSAYSFLSQFASIDASHAPSTSTSTSSLLLHTPFSRRPLSPPPESVRPARVHVNLQQITQRNRNCFIRHRNWAGRFVGPNKNSSTRAAVITATSSASVCIGPALEQPQSSSSSPVVLLVHGFGASIPHWRRNIPTLSQYSTVYAIDLLGFGASDKPAGFAYTMETWANLILDFVDQVIKKPTVLVGNSVGSLACVIAASDSSRNLVRGLVLLNCAGGMNNKAIVDDWRIKLLLPLLWLFDFLLNQRIIASALFERVKKRETLRNILSSVYGNKESVDEDLIDIIVEPANDKGALDAFVSIVTGPPGPSPVQLMPKISVPVLILWGDEDPFTPLDGPVGKYFRELSVEVPNVSLFVLKGVGHCPHDDRPELVHEKLLPWLAQLPAL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4071702 4077706 - Lsi08G001930.1 Lsi08g00193 668119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00193 450 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 172 449 - -
Lsi08g00193 450 SUPERFAMILY alpha/beta-Hydrolases 178 446 IPR029058 -
Lsi08g00193 450 Gene3D alpha/beta hydrolase 168 446 IPR029058 -
Lsi08g00193 450 Pfam Alpha/beta hydrolase family 181 437 IPR000073 -
Lsi08g00193 450 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 172 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00193 - - - csv:101215106 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00030 Lsi-Chr7:343159 Lsi08g00193 Lsi-Chr8:4071702 7.69E-06 dispersed
Lsi07g00264 Lsi-Chr7:2863973 Lsi08g00193 Lsi-Chr8:4071702 2.64E-46 dispersed
Lsi08g00193 Lsi-Chr8:4071702 Lsi10g00926 Lsi-Chr10:13728117 8.06E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1795 . Blo12g00803 . Bda03g00369 . Bpe04g00332 Bma04g00347 . . . Cma01g00893 . Car01g00814 . . . . . . . . . . . Cla08g00207 . . . . . Cre08g0181 . . . . . . . . . . . . . . . . . Cmo01g00937 . . . . . . Cpe02g00973 . . . . . . . . . . . . . . Lsi08g00193 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005437 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00193 Lsi_Chr08 FPKM 4.637555 6.153285 7.050322 4.130776 6.508031 7.062531 6.914076 7.438507 8.694595 8.922498