Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00202 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGTTATGAGTATGAAAGAAGAGAGGGCAATCAGGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAGTTTGATATTGCAAACAAGGATCCTAACGGTGCATCTGAGGCAATGCTCTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATGTTAATGGTTCTGGAAATATGGCTTCTGACCTCGACTCCTCATCCGTTCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCAGTGCCATTCACTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCAAAAAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCACTTTCCAGAAAACTGCCTATCCCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATTCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCGTTAAGATACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCTATAGACGTTTATGTCAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTGTCTATTCTTGCTGTCGATTATCCGGTAGACAAGGTTTCATGCTATGTTTCTGATGACGGTGCTGCCATGCTTACTTTTGAAGCCCTCTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAATGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCCGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGTTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAACGTCCGGGATCATCCTGGAATGATTCAGGTGAGAAGACGTTTCTTGATGCAGTCAGGCATACTCTTGAACTTTCCAGAATATCCAATACTTGTTCTACTGGTATTCCTTGGTCAAAACGGTGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATTCTCTGGTGCGTGTCTCAGCAATTATCTCAAATGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCAATTTCGGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCATGATCGATACTCTAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCGATATACGTCGGAACTGGATGTGTCTTTAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAACTGTCTTCCAAAATGGTGCTGCTGTTGCTTTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCGAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATCGAAGGAATAGATAATGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTTATGGAAGATGGTGGCGTGCCCGGAGGAGGGACTTCTGCTTCATTGTTGAAAGAAGCCATCCACGTAATCAGTTGCGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGGTCTGTTGAAATCCTGTTGAGTAGGCACTGTCCAATATGGTACGGCTATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACGTCAGTTCCACTGATCGCTTATTGTACGCTCCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCCGAGCTAAGCAACTATGCCAGTATCATTTTCATGGCACTTTTCATCTCTATAGCAGCTACTGGTATCCTAGAAATGCAGTGGGGAGGTGTCGGGATCCATGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCTTCATCTCATCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACCGTCACATCCAAAGGAGGAGACGATGGGGCATTTGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATTGGAGTAGTCGTTGGAATTTCAGATGCCATCAACAATGGTTACGACTCCTGGGGCCCGCTCATCGGTAAGCTGTTCTTCGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATCCTTCTATCATCCATATTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTCGCCAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3336 44.42 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNGASEAMLYPHLAVGRGSHVNGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGNELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVRRRFLMQSGILLNFPEYPILVLLVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCFGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGAFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLAKGGIVLEVCGLNCDD 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4295578 4302474 - Lsi08G002020.1 Lsi08g00202 668128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00202 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lsi08g00202 1111 SUPERFAMILY Nucleotide-diphospho-sugar transferases 374 893 IPR029044 -
Lsi08g00202 1111 Pfam Cellulose synthase 360 510 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi08g00202 1111 Pfam Cellulose synthase 530 1098 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi08g00202 1111 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lsi08g00202 1111 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1109 - -
Lsi08g00202 1111 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lsi08g00202 1111 SUPERFAMILY RING/U-box 28 107 - -
Lsi08g00202 1111 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Lsi08g00202 1111 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 535 676 IPR029044 -
Lsi08g00202 1111 Coils Coil 99 119 - -
Lsi08g00202 1111 PANTHER CELLULOSE SYNTHASE 1 1109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01120 Lsi-Chr1:9272017 Lsi08g00202 Lsi-Chr8:4295578 0 dispersed
Lsi08g00202 Lsi-Chr8:4295578 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00202 K10999 - csv:101214061 2123.59