Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00220 ATGGGAGTTTACTCAGTGAATTTCGCCATTAAAAACAACTGTAGTTTTCCTATTTGGCCTGGAGCATTGACCGGTGCCGGAGCTCAACTATCAACCCCCGGCTTCAAATTACTCCCCGGATCGACGGCGACGGTGAACGTTTCTTCGCCGTGGTCCGGGAGGTTCTGGGCTCGAACTCTTTGCTCCACAGATACAACTGGAAAGTTCTCCTGTGGAACTGCCGATTGTGGCTCTGGCCAAGTCTCCTGTAACGGCGCCGGCGCAACCCCGCCGGCAAGCCTGGTTGAGTTCACAACAGCCGTGAATGGCGGCCAAGATTTCTTCGACATAAGTCTTGTAGATGGCTTCAATTTGCCTGTTTCAGTGAACCCAATAGGCGGAATAGATGGTTGCAAAGCGGTGGTTTGTGCCGGAAATGTGAACGCTGTTTGTCCACCGGAATTAGCCATTAAAGGGGAAGGCGGCAACGTGATCGCTTGTAAAAGTGCTTGTATGGGTTTTAATAAGTCGGAATATTGTTGCAGCGGTGAGTATAATCAGCCAGAAACTTGTCCGCCGACGGAATATTCAAAGATATTCAAGAGTCAGTGCCCTCAAGCTTATAGTTATGCATATGATGATAAAACTAGTACATTTACTTGTTCAGGTGGGCCTAATTATTTCATCACATTTTGTCCATGA 681 48.02 MGVYSVNFAIKNNCSFPIWPGALTGAGAQLSTPGFKLLPGSTATVNVSSPWSGRFWARTLCSTDTTGKFSCGTADCGSGQVSCNGAGATPPASLVEFTTAVNGGQDFFDISLVDGFNLPVSVNPIGGIDGCKAVVCAGNVNAVCPPELAIKGEGGNVIACKSACMGFNKSEYCCSGEYNQPETCPPTEYSKIFKSQCPQAYSYAYDDKTSTFTCSGGPNYFITFCP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4955964 4958143 + Lsi08G002200.1 Lsi08g00220 668146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00220 226 ProSitePatterns Thaumatin family signature. 67 83 IPR017949 -
Lsi08g00220 226 Pfam Thaumatin family 12 226 IPR001938 -
Lsi08g00220 226 ProSiteProfiles Thaumatin family profile. 5 226 IPR001938 -
Lsi08g00220 226 PRINTS Pathogenesis-related protein signature 7 19 IPR001938 -
Lsi08g00220 226 PRINTS Pathogenesis-related protein signature 54 65 IPR001938 -
Lsi08g00220 226 PRINTS Pathogenesis-related protein signature 106 122 IPR001938 -
Lsi08g00220 226 PRINTS Pathogenesis-related protein signature 33 42 IPR001938 -
Lsi08g00220 226 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Lsi08g00220 226 CDD TLP-PA 8 225 - -
Lsi08g00220 226 Gene3D Thaumatin 6 226 IPR037176 -
Lsi08g00220 226 PANTHER THAUMATIN-LIKE PROTEIN 1B 8 226 - -
Lsi08g00220 226 SMART tha2 8 226 IPR001938 -
Lsi08g00220 226 PANTHER OS03G0233200 PROTEIN 8 226 IPR001938 -
Lsi08g00220 226 SUPERFAMILY Osmotin, thaumatin-like protein 7 226 IPR037176 -
Lsi08g00220 226 PIRSF PR5 2 226 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00167 Lsi-Chr8:3420970 Lsi08g00220 Lsi-Chr8:4955964 1.92E-137 dispersed
Lsi08g00168 Lsi-Chr8:3441767 Lsi08g00220 Lsi-Chr8:4955964 1.16E-139 dispersed
Lsi08g00220 Lsi-Chr8:4955964 Lsi03g01982 Lsi-Chr3:31196500 1.33E-88 dispersed
Lsi08g00220 Lsi-Chr8:4955964 Lsi01g01286 Lsi-Chr1:11123022 1.75E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00220 - - csv:101222472 370.163