Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00221 ATGCGGTGGCCGGCCTTGAAGATCGGTGGGCTTGGCCTCATCGCCATATCATATGTCTCCATCGACTACCTCAGCCACCTCTCGCCGGCATGGCATTCCCGTCTTCAGCCAGCCCTCTGGTCCCTCCTTGCCCTTGCCGCCGTCGTCCGTGTTCCCTTCTACAAGCACTGGTCCTCCGAGTTCCGTTCCGCCATTCCATTCCTCTCCTCCATGCTCTTTATGCTCGCCACTCTGCTCTTCGAAGCCCTCTCCGTTCGATTCGTCACTGCCGTCCTCGGTCTCGATTGGCACAGTGACACATCTCCTCTTCCTGATACTGGCCAATGGTTACTCTTGGCATTGAACGAGAAACTTCCTCATGCTGTCGTGGAGATATTGAGAGCTCGGATTATTGGATTGCACCATTTCCTGATGTTGTTCATTATGTTGGCATTCTCTGTGCTGTTTGACTCTGTAAAAGCTCCTGGACTTGGACTTGGTGCAAGGTATATGTTCACAATGGCAATCGGCCGATTTCTTAGAGCCATAACTTTTGTATCTACAATTCTACCATCTGCAAGGCCATGGTGTGCTTATTCTCGATTCAGAGTCCCAGCATACCCTCATCGTTGGGCACAGAAGTACTATGTTCCATATGCTGAAGATGCTGATACAATTCGCCAGTTAATAAATCGGGACATAGCTTTTGCTGATCCTGGACAGATTCTTGGTGACTACAAACCTGATTGGGGTAAAATGAGCTTCTTACTAGATTTCCTTCGACCAACACCCTCTGAAGGATCCTCTTGGTACAATTTGCTTAAGAAGGCTGGTGGTGGCTGCAATGACCTTGTATACAGTGGCCACATGCTCGTTGCCGTCCTCACTGCCATGGCCTGGACGGAGGCTTATGGAGGTCTTAGTTCGGCTGTTGTATGGTTTTTTGTAATACACAGTGCACAGCGTGAAATACGAGAACGCCACCATTACTCTGTCGATTGTGTTGTTGCAATATATGTTGGCATCCTCTTATGGAAAATGACTGGCTTCATTTGGTCAGCAAAAAACGTCGTGAAACGTCGAAGGCTAGCGAAGTTGGAGAAGATTCAAAGTAAACTAGTACAAGCTGCAAAAGATGCGGATATTGATCAGGTGAGAGAACTTCTAAAAGAAATAGAGTCAACTAGTCAAGAGAGCGACAATGATGGCAACCGAGGCCAGAGCGGAGTGTTGTGGTTCTTCGCTTGTGCAACGATATTTGCTGCACTTGTCATAGTTCTTCTAGCCTTCACATGGACAAGTGATGGATAA 1290 47.98 MRWPALKIGGLGLIAISYVSIDYLSHLSPAWHSRLQPALWSLLALAAVVRVPFYKHWSSEFRSAIPFLSSMLFMLATLLFEALSVRFVTAVLGLDWHSDTSPLPDTGQWLLLALNEKLPHAVVEILRARIIGLHHFLMLFIMLAFSVLFDSVKAPGLGLGARYMFTMAIGRFLRAITFVSTILPSARPWCAYSRFRVPAYPHRWAQKYYVPYAEDADTIRQLINRDIAFADPGQILGDYKPDWGKMSFLLDFLRPTPSEGSSWYNLLKKAGGGCNDLVYSGHMLVAVLTAMAWTEAYGGLSSAVVWFFVIHSAQREIRERHHYSVDCVVAIYVGILLWKMTGFIWSAKNVVKRRRLAKLEKIQSKLVQAAKDADIDQVRELLKEIESTSQESDNDGNRGQSGVLWFFACATIFAALVIVLLAFTWTSDG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4970936 4974575 - Lsi08G002210.1 Lsi08g00221 668147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00221 429 Pfam PAP2 superfamily C-terminal 273 340 IPR025749 -
Lsi08g00221 429 PANTHER SPHINGOMYELIN SYNTHETASE 7 429 IPR045221 GO:0016780
Lsi08g00221 429 Coils Coil 375 395 - -
Lsi08g00221 429 PANTHER OSJNBA0035I04.2 PROTEIN 7 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00221 - - - csv:101212215 807.749
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1364 . Blo12g00784 . Bda03g00394 . Bpe04g00356 Bma04g00372 . . . . . . . . . . . . . . . . . Cla08g00249 Cam08g0690 . Cco08g0328 Clacu08g0396 . Cre08g0219 Cone4ag1491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00221 . Chy03g00261 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012340 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00221 Lsi_Chr08 FPKM 1.603175 1.458798 4.50379 5.082841 1.646861 0.640314 1.685675 15.420379 21.508778 22.629841