Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00237 | ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCGGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACCGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCGGCCTCGAACAACACGCTGGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTCGCAGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGCCATCGAGAAGAAACTCGCAGTGGTGGATGAGATCGCTTCCTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACTCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAGATTACGAACACAGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCAAAGAATGTGAGGATAAAGACGCAGATCGATCCAAGTCTTGTAGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAGATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATAA | 723 | 54.22 | MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5218543 | 5219265 | + | Lsi08G002370.1 | Lsi08g00237 | 668163 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00237 | 240 | Pfam | ATP synthase delta (OSCP) subunit | 58 | 231 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 190 | 209 | IPR020781 | GO:0015986|GO:0016020|GO:0046933 | |
Lsi08g00237 | 240 | Hamap | ATP synthase subunit delta [atpD]. | 53 | 233 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | Gene3D | - | 57 | 149 | IPR026015 | - | |
Lsi08g00237 | 240 | PANTHER | BNACNNG66500D PROTEIN | 47 | 239 | - | - | |
Lsi08g00237 | 240 | TIGRFAM | ATP_synt_delta: ATP synthase F1, delta subunit | 58 | 231 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PRINTS | ATP synthase delta subunit signature | 206 | 224 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PRINTS | ATP synthase delta subunit signature | 188 | 203 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PRINTS | ATP synthase delta subunit signature | 57 | 76 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PRINTS | ATP synthase delta subunit signature | 137 | 151 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PRINTS | ATP synthase delta subunit signature | 126 | 137 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | PANTHER | ATP SYNTHASE DELTA CHAIN | 47 | 239 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi08g00237 | 240 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 54 | 157 | IPR026015 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02142 | Lsi-Chr4:28539237 | Lsi08g00237 | Lsi-Chr8:5218543 | 2.31E-10 | dispersed | |
Lsi05g02152 | Lsi-Chr5:28251194 | Lsi08g00237 | Lsi-Chr8:5218543 | 1.58E-17 | dispersed | |
Lsi08g00237 | Lsi-Chr8:5218543 | Lsi02g02578 | Lsi-Chr2:32238544 | 2.76E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00237 | K02113 | - | csv:101211740 | 395.586 |