Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00237 ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCGGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACCGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCGGCCTCGAACAACACGCTGGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTCGCAGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGCCATCGAGAAGAAACTCGCAGTGGTGGATGAGATCGCTTCCTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACTCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAGATTACGAACACAGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCAAAGAATGTGAGGATAAAGACGCAGATCGATCCAAGTCTTGTAGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAGATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATAA 723 54.22 MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLGHHRSHGGAKMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIAIEKKLAVVDEIASSSSLQPHSANFLKILVDSKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5218543 5219265 + Lsi08G002370.1 Lsi08g00237 668163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00237 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Lsi08g00237 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 Gene3D - 57 149 IPR026015 -
Lsi08g00237 240 PANTHER BNACNNG66500D PROTEIN 47 239 - -
Lsi08g00237 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 PANTHER ATP SYNTHASE DELTA CHAIN 47 239 IPR000711 GO:0015986|GO:0046933
Lsi08g00237 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02142 Lsi-Chr4:28539237 Lsi08g00237 Lsi-Chr8:5218543 2.31E-10 dispersed
Lsi05g02152 Lsi-Chr5:28251194 Lsi08g00237 Lsi-Chr8:5218543 1.58E-17 dispersed
Lsi08g00237 Lsi-Chr8:5218543 Lsi02g02578 Lsi-Chr2:32238544 2.76E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00237 K02113 - csv:101211740 395.586