Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00248 ATGGCGAATCGCGTATACCAAGTCTGGAAAGGAAGTAATAAGTTTATCCTTGGTGGGAGACTAATATTTGGGCCTGATGCTAGGTCATTGCTTGTCACAGTATTGCTGATTACAGTTCCAGTTATCATCTTTTGTGCATTTGTTGCTAGACATCTTCGACACAAGTTTTTATCATATAATGCAGGATATGCCATTCTGGTGGTCGCCATTGTTTTTACTATATATGTTAGACCTCTTGACCCCTCTTTAACGTTTAAGTATTTGTGTAAATTATTGTTCTTTAAAAAGCAAATATTTAAGTTTGTTAATGCGAATTGGATATGGATGATTGTTCTATCTTTGATGAAATATCTGATCCCTTCTATGGACCCAGGAATAATCCCTCGCAATTCACATCCTCCAGAGGATGAAATCCGTTTTGACTCTTCAGTATCAGTCGATGTTGGGGGAAGGCAAACTCCAAGTCTCCAGTTTCCTCGGACAAAAGAAGTTATTGTAAATGGGCTCCCACGGAACTATCGTTACTTCTTTATGTTTGTATCTTCTTCAACACTTCTTTGCATGTATGTGTTTGCAATGTCAGCATTTTATATCAAGGTTCTGATGGATCAATATGAGAGCACTGTTTGGAAGGCAATGAAAGAATCACCTGCATCAGTCATATTAATGGCCTACTGCTTTATCTCCCTTTGGTTTGTTGGTGGTCTAACTGGCTTCCATTTGTATCTTATTGGCACAAATCAGACAACCTATGAAAATTTCCGGTACAGAGCTGACAATAGGATCAATGTTTTCAACCGGGGTTGTCCGAATAATTTTCTTGAAGTATTTTGCTCGAAAGTAAAGCCATCAAGGAACAATTTTCGAGCTTTCGTCCAAGAGGAGGTGCCAAGGCCTCAAGTTCTTCCTCAGTTGCCCCGTGCCGCAGCCGATGATTTGGCTGCACATCCACGTTCAAAAGTCGAAGACGATCTTGATATAGGTGAAGACTTGTTGAAAATCTCCCAGCGCCGTAACATCGATGAAATCTCAGAGGACATACGTAGCAGAGGGAGTAATGGGCCGCCTCTTAATGCTCCAGAGACGGACCCTGTTTTGGAATCTGATCATCAAGCACCAACAATTCGATCAGACCGGCATTCAAGTTGGGGAAGAAGAAGCGGTAGCTGGGAAATTGCAACCGAGGTCTTTGCCAACTCGAACGTGACTGAAAGCCGAAGTTATGTAACATCAAAGGAGGCATTTCAGTGA 1251 41.65 MANRVYQVWKGSNKFILGGRLIFGPDARSLLVTVLLITVPVIIFCAFVARHLRHKFLSYNAGYAILVVAIVFTIYVRPLDPSLTFKYLCKLLFFKKQIFKFVNANWIWMIVLSLMKYLIPSMDPGIIPRNSHPPEDEIRFDSSVSVDVGGRQTPSLQFPRTKEVIVNGLPRNYRYFFMFVSSSTLLCMYVFAMSAFYIKVLMDQYESTVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVFNRGCPNNFLEVFCSKVKPSRNNFRAFVQEEVPRPQVLPQLPRAAADDLAAHPRSKVEDDLDIGEDLLKISQRRNIDEISEDIRSRGSNGPPLNAPETDPVLESDHQAPTIRSDRHSSWGRRSGSWEIATEVFANSNVTESRSYVTSKEAFQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5548347 5554544 - Lsi08G002480.1 Lsi08g00248 668174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00248 416 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 171 413 - -
Lsi08g00248 416 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 5 76 - -
Lsi08g00248 416 MobiDBLite consensus disorder prediction 343 386 - -
Lsi08g00248 416 PANTHER S-ACYLTRANSFERASE 171 413 - -
Lsi08g00248 416 PANTHER S-ACYLTRANSFERASE 5 76 - -
Lsi08g00248 416 PANTHER S-ACYLTRANSFERASE 101 170 - -
Lsi08g00248 416 Pfam DHHC palmitoyltransferase 171 255 IPR001594 GO:0016409
Lsi08g00248 416 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 101 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00248 K16675 ZDHHC14_18; palmitoyltransferase ZDHHC14/18 [EC:2.3.1.225] - csv:101210342 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00248 Lsi-Chr8:5548347 Lsi08g00565 Lsi-Chr8:13875177 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00248 Lsi_Chr08 FPKM 10.494343 11.264401 4.72444 4.388763 4.23604 4.135185 6.006513 3.876671 3.995481 3.571092