Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00253 ATGGGCTGTGCACAAACGAAGCATTCCGTGAATTCGCCCTCTGGGGGAATTGAGAAGCTGAAATTGGAAAATGGGTATGCTGGGATTGAAGGTTTTCTTGCTCATCGGAGGTCGGTCGGGCAGAGGAGATATGTCAGCAGGGAGTCGTCTGAAGCAGAGAAGCCTCACGGCGGTGATGGTGGCGGCGAGAATGGCCAATTTGGTTCAGAGAAGAGTGAGCTAGTGGATGGGTGGCCCAAATGGCTTACTAGCAATATTCCTAAACATGTGTTGGCTGGCTTGGTACCCAAGAGTGTGGAGGCCTATGACAAGCTTGATAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACATCAGAACCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATACTACTGAAACTGGATCACCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTATTTGATTTTATGCTGACTGATTTGGCCCGAGTTATTTCCCACCCTGATGTACGGCTTACAGAGCCTCAGGTCAAATGCTATATGCATCAGCTACTTTCTGGTCTGAAGCATTGCCATGATAAGGGGATTCTACATCGTGATATCAAAGGATCAAATCTGTTAATCGACAAAAATGGGATGCTGAAGATTGCCGATTTTGGGCTTGCCATTTTCTTCAGTCCAAAGAGGCCTCTTACAAATCGTGTTGTGACTCTTTGGTATCGAGCTCCAGAGCTATTGTTAGGTGCTACAGATTATGGAGTTAGCATTGATCTATGGAGTGCTGGATGCCTCTTTGCAGAAATGTTCACGGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGTTATGTGGTACACCATCTGAGGAATATTGGAGAAAACTCAAGCTGGCACCAACTTTCAGACCTCCACAGTCGTATAGACCTAGTCTTGGAGAATTTTTTAAGAATTTTCCGTCATCTTCTCTAGGCCTACTCAGCACTCTACTCGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTTAGCCCTTGAGAATGAATTCTTTTACACAAGCCCACTGGCATGCAGCCTTTCGGATCTTCCTGTAATCCACAGCAAGCCCGATGAATTGGATCAAATGAATCAGCAGAAGTGTAGGAATGCTAAAGTGACAAGGCGTTCTCATACACACCGAGAGTGCCGGAGGAAAGATTCAACCGCCAGAATGCCGAAAGAAGAATCGAACATTCCCAAACAGTCGGTCACCGATGCTGTGCCAATGGATGTCATGGCAACCACCTTGGCTCTTTCACAGCAAACGGGAGATGGTGATGAACAAGGTGAAAAGCGAGGGAGTACTATGACGAGCACCTCCTCAAGTGTGAACACAGGAAGGCGAAAGACGACGAGCACCTCCTCAAGTGTGAACATGGGAGGGGGAAAGGGGAGCTCTCACTTCTTGCTATCTCCAGTTTCATATTCTAATAGGAGATCGTCAAGAACCCAAGGCCATCTTCAGGCTGCTAAGAACCTCAACTTGCCTCCGTTGCCTAAGATGAGAGAATACTCAACCTTCAACAACGAAGACCACGGTGCACATATCACAGGTCAGGTTCGGAGGTCGGTCTCAACCAGAGATTTCAGGAACTTGGGGCGAAAAGAGCATTTGAAATTATATGTCGATGATTAG 1770 46.38 MGCAQTKHSVNSPSGGIEKLKLENGYAGIEGFLAHRRSVGQRRYVSRESSEAEKPHGGDGGGENGQFGSEKSELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTSEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMLTDLARVISHPDVRLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGMLKIADFGLAIFFSPKRPLTNRVVTLWYRAPELLLGATDYGVSIDLWSAGCLFAEMFTGRPILPGRTEVEQLHKIFKLCGTPSEEYWRKLKLAPTFRPPQSYRPSLGEFFKNFPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACSLSDLPVIHSKPDELDQMNQQKCRNAKVTRRSHTHRECRRKDSTARMPKEESNIPKQSVTDAVPMDVMATTLALSQQTGDGDEQGEKRGSTMTSTSSSVNTGRRKTTSTSSSVNMGGGKGSSHFLLSPVSYSNRRSSRTQGHLQAAKNLNLPPLPKMREYSTFNNEDHGAHITGQVRRSVSTRDFRNLGRKEHLKLYVDD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5723596 5728036 - Lsi08G002530.1 Lsi08g00253 668179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00253 589 SUPERFAMILY Protein kinase-like (PK-like) 97 386 IPR011009 -
Lsi08g00253 589 MobiDBLite consensus disorder prediction 464 516 - -
Lsi08g00253 589 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Lsi08g00253 589 MobiDBLite consensus disorder prediction 43 71 - -
Lsi08g00253 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lsi08g00253 589 PANTHER CYCLIN-DEPENDENT KINASE 57 516 - -
Lsi08g00253 589 MobiDBLite consensus disorder prediction 477 507 - -
Lsi08g00253 589 MobiDBLite consensus disorder prediction 416 451 - -
Lsi08g00253 589 SMART serkin_6 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00253 589 Gene3D Transferase(Phosphotransferase) domain 1 185 426 - -
Lsi08g00253 589 PANTHER CELL DIVISION PROTEIN KINASE 57 516 - -
Lsi08g00253 589 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Lsi08g00253 589 ProSiteProfiles Protein kinase domain profile. 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00253 589 Pfam Protein kinase domain 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00253 589 MobiDBLite consensus disorder prediction 43 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00253 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 975.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01107 Lsi-Chr1:9154622 Lsi08g00253 Lsi-Chr8:5723596 1.92E-173 dispersed
Lsi06g00225 Lsi-Chr6:2593680 Lsi08g00253 Lsi-Chr8:5723596 1.01E-06 dispersed
Lsi08g00253 Lsi-Chr8:5723596 Lsi05g01501 Lsi-Chr5:22835363 6.63E-154 dispersed
Lsi08g00253 Lsi-Chr8:5723596 Lsi11g00478 Lsi-Chr11:5048834 4.12E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83810 PF00069 Pkinase 5.50E-67 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00253 Lsi_Chr08 FPKM 1.22619 0.983304 0.964288 0.701776 1.842251 1.790444 1.268282 0.283366 0.400241 0.168674