Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00258 ATGTCGATGCTCAACTCCTTCTTCAACAAGGGCTTCAGGGCTGCCCAATGTAAAACACTGCTTAAGTTGACAATTCCACGAATAAAGCTGCTGAGGAATCGAAGGGAGATCCAGCTTAAGCAGATGCGTCGAGACATAGCTAAGCTTCTCGAGACAGGACAAGAAGCTACTGCTCGGATTCGGGTAGAGCATATAATCAGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAATTGTTTTGTGAGCTTATTGTTGTTCGCCTTCCGATTATTGAAACACAAAGGGAATGTCCTCTAGACTTGAAAGAAGCGATCTCAAGTGTGTGTTTTGCTGCTCCGAGGTGTGCTGATCTTACAGAGCTTCTCCAGGTTCAGATGCTTTTTGCTGCTAAATATGGAAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAATCGTCAGTTGATAGAGCTGCTTTCTGTTCGTGCTCCTTCACCTAAAAAGAAACTGAAGCTGTTAAAGGAAATCGCTGAAGAGCACGACTTAGATTGGAATCCTGCCGGAACTGAAGCTGAGTTTAACAAATCTCCAGAAGATTTGCTTAATGGATCGGCGCAGTTTGTCAGTGCATCAAAATTACCCCTTCCGCAAGAGAAACACAATGAAACATCCACTGCTACTCCTGATTTGGCTAGTGCACCACAACCTGATTCTGATTCTGAATTAGACATGTTAGACTTTCCTGAAGTTCCAAAGATATCGGTATGTCCACATCCTGCTGTAGATGTTGGCTCTGCATCGTCAATGGTCCCACCTCCATCCGTGTCGCCACCACCTGAAATTGATCATTCTTCATTGAAGTATTCTGGTATTCCTGAAACACCACCACAAGATCTACACTTGAGACATGAGGAGATGACTTCGGCGAGATCTGTTTCACCCAGCAACGATCAAATGAATATTTCTGTTGGTGAAGATAAACAGTTTTTGCCTTTTATTACTCCCCCATCATTGTCATCTTCATTCTCTCATAGACAAACTGATTTGTCGCCACCTTCTGATCCAACGACCCCTGAGGAGAAGTCTGGTTTCAAACCACGGATTGAACAGGAGATAAACTCACCACCACACTCTGTTTCAAGGACCCCTGAGGAGAAGTTTGGTTTCAAACCGCGGTTCGAAGCAGAGATAAATTCACCACCGTCCTCTGTTTCAAGGACAATGAGTGAGGTCAATGTGGATGTTGGTGTGGATTTGCAGGACGTGTTGGCAGCTGCTCAGGCTGCTGCTGAAACTGCTGAACGTGCTGCCGCTGCAGCTCGCTCTGCAGCTAGTCTTGCAAAGGTTAGAATCGACGAGCTCACAAAGAAAAAGAATGATAAGGACCCTGAAATTAGTTGCGAAAATCCGTTCCATGGAGCTACTGCAAGTCCACCAGATCATAAAGAAACATTCCAACTAAACAAGCAAGATTCTCTGGGACATCATTCTAGTTCTATACCATATTATTCACAAGATTCTTTCCAAGAACATCACAAAGTAAGCCGCAATTCAGATGTTTCTGATCACCACCAGCTGGAGCCAGAGAAATCGGGTTTCGATTCCTCTCCTGGTGATTCACCAACTGAACACATAGCAGGCCCTCATCAGCCCCAGAGGCTCCCGTCAATGGACGACGACCAATACTTTTCATACCCGAATTTATTTACATCACAGAAACCAAATCCAGGATCTGATCATTCATCAGCTTCAGCTGGTGGTTCCCGATCTCCTTGA 1773 44.78 MSMLNSFFNKGFRAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQMLFAAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPKKKLKLLKEIAEEHDLDWNPAGTEAEFNKSPEDLLNGSAQFVSASKLPLPQEKHNETSTATPDLASAPQPDSDSELDMLDFPEVPKISVCPHPAVDVGSASSMVPPPSVSPPPEIDHSSLKYSGIPETPPQDLHLRHEEMTSARSVSPSNDQMNISVGEDKQFLPFITPPSLSSSFSHRQTDLSPPSDPTTPEEKSGFKPRIEQEINSPPHSVSRTPEEKFGFKPRFEAEINSPPSSVSRTMSEVNVDVGVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDKDPEISCENPFHGATASPPDHKETFQLNKQDSLGHHSSSIPYYSQDSFQEHHKVSRNSDVSDHHQLEPEKSGFDSSPGDSPTEHIAGPHQPQRLPSMDDDQYFSYPNLFTSQKPNPGSDHSSASAGGSRSP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5903906 5908965 + Lsi08G002580.1 Lsi08g00258 668184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00258 590 MobiDBLite consensus disorder prediction 452 590 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 489 507 - -
Lsi08g00258 590 Coils Coil 32 59 - -
Lsi08g00258 590 Coils Coil 422 442 - -
Lsi08g00258 590 Gene3D - 5 192 IPR042277 -
Lsi08g00258 590 PANTHER IST1 FAMILY MEMBER 1 577 IPR005061 GO:0015031
Lsi08g00258 590 MobiDBLite consensus disorder prediction 329 383 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 508 529 - -
Lsi08g00258 590 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 577 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 332 356 - -
Lsi08g00258 590 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Lsi08g00258 590 MobiDBLite consensus disorder prediction 212 243 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 212 233 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 452 466 - -
Lsi08g00258 590 MobiDBLite consensus disorder prediction 562 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00258 - - - csv:101208940 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00551 Lsi-Chr1:4447977 Lsi08g00258 Lsi-Chr8:5903906 2.50E-79 dispersed
Lsi06g00253 Lsi-Chr6:2836199 Lsi08g00258 Lsi-Chr8:5903906 1.06E-69 dispersed
Lsi08g00258 Lsi-Chr8:5903906 Lsi09g01032 Lsi-Chr9:15002536 4.21E-39 dispersed
Lsi08g00258 Lsi-Chr8:5903906 Lsi10g00882 Lsi-Chr10:13108650 8.21E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00258 Lsi_Chr08 FPKM 15.45067 19.422625 65.651657 69.236412 3.892716 5.282542 5.277041 52.849728 55.651566 57.708694