Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00259 ATGGTAGTTCGGTCAGTATCGTTCGGGCAGCTCCCTACCCTCACAAAAACAAAAAAAAATACGTCTCTAGTACTCATCTCTCTCTCTCGATTTCAACTTTCAAGTTTCAATCTCTTTCTCTTTCTGCATCCACTCCTCAAAAGAAGAGAGAGAAAGAAAGAAAGAAAAAAAACACTAATCCCACTCCAAAACACTTTCACAGACAGAGAGGAGAGAAGAGAGAGACAGCGGAAAAGGGAAAGTAAGCTTAGAAGAAGAAAGCATGCCCGTGAAACACCATCAAATTTACTGAAATATTCTGATTTTTCTCTTCTGGGGTTTGCCTTTTTGAGGTCGCCAGATCGGCTTTGCGTGCTGCTGATTTTTCACGATTTTGTCTTTGGGCTCAAATGTTGGAGATTTTGGTGGATTTTTGAACTGGGGGGTTTAGGTTTTGTTCCCAACTGGGGTTTTGGAGGTTCTGTGATGATTGTGTTTGTTGTTTTACCATTTGGATCTGATGTTGATGATCACTTAATGGAGATGGAGCAGTACAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGCTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCCTGCAGAGCTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTAGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAGTGACCTGGGGAATCTGACTAGTTTGATTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCGAAACTAAGATTCCTTTCTTACATTGTTTTTGCTTGGAATGTTTTAATAAGGATAGCCGGCTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAATAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTCCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCAACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCGTTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTACATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCCGTAAAAAGACTTAAGGAAGAACGTACGCCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGATTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCATCTTGCTTAAGAGGTACCTGTTTTCGGAATGAAGTTTACCATTCATATGGGTTCTTTTCTAATCGGTTTGGTTTTAATATTTTAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAGTTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCACCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACCGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTACGGTATCATGCTTTTAGAGCTTATCACTGGGCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGATCTTCAAAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAATCCTTCGGCAAGAAATCGATTTATCGCCCCATCCAAATTCCGATTGGATTGTCGATTCAACCGAAAATCTGCATGCAGTTGAGCTTTCGGTAGCTCCATGGAACGGATTTTCGCAACTAATTTCAGGGTCCTTATCATTCTTTTTCTTTGTGAGCTCGTCGATTCTAACCTTTGCAAGACTAGCTGCAGAGCGAGCTGCAGCGGCAGCACGTTCAGCAGTTTCAGCAGCAGCCTGA 2622 44.2 MVVRSVSFGQLPTLTKTKKNTSLVLISLSRFQLSSFNLFLFLHPLLKRRERKKERKKTLIPLQNTFTDREERRERQRKRESKLRRRKHARETPSNLLKYSDFSLLGFAFLRSPDRLCVLLIFHDFVFGLKCWRFWWIFELGGLGFVPNWGFGGSVMIVFVVLPFGSDVDDHLMEMEQYKVLALGFVSLILLLPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLIFGSDSRHIGQAVETKIPFLHCFCLECFNKDSRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRGTCFRNEVYHSYGFFSNRFGFNILERPPSQPPLDWRTRKRVALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSVAPWNGFSQLISGSLSFFFFVSSSILTFARLAAERAAAAARSAVSAAA 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5908203 5932254 - Lsi08G002590.1 Lsi08g00259 668185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00259 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Lsi08g00259 873 SUPERFAMILY Protein kinase-like (PK-like) 460 780 IPR011009 -
Lsi08g00259 873 SUPERFAMILY L domain-like 203 372 - -
Lsi08g00259 873 Gene3D Phosphorylase Kinase; domain 1 450 557 - -
Lsi08g00259 873 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Lsi08g00259 873 Pfam Protein tyrosine and serine/threonine kinase 484 779 IPR001245 GO:0004672|GO:0006468
Lsi08g00259 873 SMART serkin_6 481 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00259 873 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 184 570 - -
Lsi08g00259 873 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 184 570 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lsi08g00259 873 Gene3D Transferase(Phosphotransferase) domain 1 590 799 - -
Lsi08g00259 873 Gene3D Ribonuclease Inhibitor 199 390 IPR032675 -
Lsi08g00259 873 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 591 825 - -
Lsi08g00259 873 ProSiteProfiles Protein kinase domain profile. 481 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00259 873 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 591 825 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lsi08g00259 873 MobiDBLite consensus disorder prediction 70 89 - -
Lsi08g00259 873 Pfam Leucine rich repeat N-terminal domain 200 240 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00152 Lsi-Chr7:1630922 Lsi08g00259 Lsi-Chr8:5908203 1.53E-40 dispersed
Lsi07g00190 Lsi-Chr7:2064152 Lsi08g00259 Lsi-Chr8:5908203 0 dispersed
Lsi08g00259 Lsi-Chr8:5908203 Lsi08g01665 Lsi-Chr8:24413379 0 dispersed
Lsi08g00259 Lsi-Chr8:5908203 Lsi08g00261 Lsi-Chr8:5944228 1.47E-16 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83811 PF07714 PK_Tyr_Ser-Thr 1.20E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00259 K13418 - csv:101208695 1051.58