Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00269 ATGGCTCGTTATGTGTCGGGCGGTGGAGCAGGTTCGATACGTGTGGTAACCGTTGCAGTGGTCGTGTTGATGCTACTTGGCTTGAAACATGGCAATGCTGCAACTTTTATTGTTGGAGGTTCTGATGGATGGAACATCAACATGAAGGGATGGCCAAACAAGAAGGTGTTTAGAGCTGGTGATGTATTAATGGATGAGGTGAGTTATAAAAGTTGTACGGCTCCGAGAGGTGCCAAAGTGTTCAATTCTGGCAGCGATGAGATCAAGCTCTTAACCGGATCCAATTTCTTCATATGCACCTTACCAGGCCACTGCCAAGCTGGGATGAAGATCGTCGTCACTGCTAGTGACCCCTAA 357 47.62 MARYVSGGGAGSIRVVTVAVVVLMLLGLKHGNAATFIVGGSDGWNINMKGWPNKKVFRAGDVLMDEVSYKSCTAPRGAKVFNSGSDEIKLLTGSNFFICTLPGHCQAGMKIVVTASDP 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6510731 6513705 + Lsi08G002690.1 Lsi08g00269 668195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00269 118 Gene3D - 34 115 IPR008972 -
Lsi08g00269 118 PANTHER BLUE COPPER PROTEIN 12 114 IPR039391 GO:0009055
Lsi08g00269 118 Pfam Plastocyanin-like domain 46 109 IPR003245 GO:0009055
Lsi08g00269 118 PANTHER BASIC BLUE-LIKE PROTEIN 12 114 - -
Lsi08g00269 118 ProSiteProfiles Phytocyanin domain profile. 34 117 IPR003245 GO:0009055
Lsi08g00269 118 SUPERFAMILY Cupredoxins 34 115 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00269 - - - cmos:111446556 144.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00269 Lsi-Chr8:6510731 Lsi08g00512 Lsi-Chr8:13039771 1.16E-29 dispersed
Lsi08g00269 Lsi-Chr8:6510731 Lsi09g01333 Lsi-Chr9:21250236 7.76E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00269 Lsi_Chr08 FPKM 0.0 0.359036 0.0 0.30835 0.317347 0.433457 0.591977 0.887569 0.800138 1.147497