Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00273 ATGGTACCTTCGGGGCCATCTACTCCCATTGGTGGTGCGCAGTCTGTTTCACCATCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCCCCACGGACACAGTTTAGCAATATGAATATGCTTGGTAATACACCCAGTATGTCTTCTCTCCTAAATCAGTCATTTGGGAATGGAGTTCTGAATTCTGGGCCCTCAGGCCTTGGAAACAGCCAACGAGGAGTTATGGACCCTGGTTCTGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACCCCATCCTCATTGGTGACATCAAATACAACAAACCCTGGTTCATCTAGTCAAGTTCCAGGGCAGCAATTTTCAAATCATTCTAGCAGCCAAATAATACCCAATCAACAGCAACCACAGCAAATTGAAGCCCAGAACTTCCAACATAGTCAGCATTCAATGCAACAGTTCGCTACGTCTAATAACACACAGCAGTCACAGCAGCAACAACAGCATCAATTCCAACGAGGAAACTTATGCGGCGTTGGTGTCAAGTTAGAGCCTCAAATGAATAATAATGATCTTCAAGGACAGCAACTACAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACATGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCACCAACATCAACATCAACATCAACAACAACAGCAACAACAACAACAGCAGCTACTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCACAGATTAGTCTTTTGCAACAACAAAGACTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATACCTCAGCAAAGACCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAATCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAGTTATATGTGCCAACAACAGCAAAGGCCTGAAGACAACAATATTGAGTTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGCGTTTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCGCAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCGACTTTTGAAGTTCTTCCAAGGCTGTTCAAAATCAAGTATGAGAGTGGAACGCTCGAAGAGCTTCTCTATGTTGATATGCCCCGCGAATATCATAATTCATCTGGACAAATTGTCCTAGATTACGCAAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGCATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTGATTCCTCGAAGGTTGCTAATACCTCAGGTTAGTCAGCTGGGTGCAGCTGCTCAGAAGTATCAGACTGCAATTCAAAATGCATCATCTAACTTGCCTACTCCAGAGTTGCAAAATAATTGCAACATTAAGAGTTATGATTTTGACGGGAACCTTTTCAGGTTTGTGGGCTCAGCTAGACAATTGGCGAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACAAAGAGATACATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTACCACTGGGCCAATTGAGAGTTTGGCAAAGTTTCCGCGGAAGACGAATGCTTCACCAGGCTTCCACAGCCAAGCTCAAAATTCCGAACAATTACCTCAGCCTCAGCAAACAATTGATCAAAACGCAAACGGTGACCAAAGCTCTGCTCAGGCTGCTTCAATGCAGCTTGCTGCTAACAATGGTGTTCCAAGTGCAAATAACTCTGGTAATCCAGCATCAACTTCATCTCCTGCCAGTACCATTGTTGGGTTACTTCACCAGAACTCCATGAACTCCAGACAGCAGAACTCTATCAATAGCGCTGGCAGCCCTTATGCCGGAAATTCTGCACAAATATCGTCCCCAGGTTCCTCCACCACAATTGCTCAGGCACAAGCAAACTCCTCGTTCCAATCGCCTACATTGTCCTCACCTAACAATCACCCACAGTCATCAATTGGCACTGCAACAACTACAAATCACATGAGTGCCACTAATTCTCCGGCGAATGTTCCCTTGCAACAGCCAACACAATCTTCCGATGCAGATCAAAACGATTCCCAAAGTTCCGTACAAAAGATTATTCAGGAATACATGATGTCAAACCATCTAAATGGGATGAACACAATGACTGGTGTATCCTCTATAGGAGATGATGCGAAAGCTGTTAACGGGATGTTGCCGGCAAACAACATTATGAGTCTCAATGGACGGAATGGCCTCATCGGGACTGGAACTGCTAATGGCGTTTCTGGTATAAGGAATGCGGGATATGGCTCAATGAGTGGGGGGCTTGCTCAGGCCTCTATGGTCGTCCATGGAATGAAGTCTGCAATGGGAAATAACTCGATTTCGAACGGGAGAAATGGGATGGCGTCATTGGCTAGAGAACAGAGCATAAATCATCAAGATTTGGGGGACCAGCTTCTTAATGGACTTGGAGCTGTGAATGGATTTAGTAATATTCAATTCGATTATTGA 2745 44.26 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSNMNMLGNTPSMSSLLNQSFGNGVLNSGPSGLGNSQRGVMDPGSESDPFSLVGNGVNFNNTPSSLVTSNTTNPGSSSQVPGQQFSNHSSSQIIPNQQQPQQIEAQNFQHSQHSMQQFATSNNTQQSQQQQQHQFQRGNLCGVGVKLEPQMNNNDLQGQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNMGPVKLEPQQSDQSLFLQHQHQHQHQQQQQQQQQQLLSMSRQSSQAAAAQISLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKSVYEPGMCARRLTSYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLPTPELQNNCNIKSYDFDGNLFRFVGSARQLAKALEVPLVNDLGYTKRYISEVVNSMKDLIDYSQETTTGPIESLAKFPRKTNASPGFHSQAQNSEQLPQPQQTIDQNANGDQSSAQAASMQLAANNGVPSANNSGNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSAQISSPGSSTTIAQAQANSSFQSPTLSSPNNHPQSSIGTATTTNHMSATNSPANVPLQQPTQSSDADQNDSQSSVQKIIQEYMMSNHLNGMNTMTGVSSIGDDAKAVNGMLPANNIMSLNGRNGLIGTGTANGVSGIRNAGYGSMSGGLAQASMVVHGMKSAMGNNSISNGRNGMASLAREQSINHQDLGDQLLNGLGAVNGFSNIQFDY 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6897463 6909544 + Lsi08G002730.1 Lsi08g00273 668199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00273 914 MobiDBLite consensus disorder prediction 8 41 - -
Lsi08g00273 914 PANTHER LIM DOMAIN-BINDING PROTEIN 1 914 IPR029005 -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 67 184 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 242 275 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 685 778 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 654 673 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 67 91 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 1 41 - -
Lsi08g00273 914 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 914 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 612 649 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 100 184 - -
Lsi08g00273 914 MobiDBLite consensus disorder prediction 600 649 - -
Lsi08g00273 914 Pfam LIM-domain binding protein 343 603 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00273 Lsi-Chr8:6897463 Lsi08g00515 Lsi-Chr8:13068820 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00273 - - csv:101221714 1399.42