Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00274 | ATGTCCCGATCGTTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTCGCGGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGTTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCATGCGTGAAATTCATTTCGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCACCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGATGATGATTATGAGAATGTGGAACTGCCACCAAGGCAAGTCAAGGAATCGGAATCAGCTATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCTGTTGACGGGGAGAATGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTGCTCAGTTTAGAGAGCATCACAAGGGTGAATGGCATAAGCATAACGTCAAGCGCAAAACCAAGAATCTTCCGCCTCTAAGCGAAGAAGAGTGCAGGGTAGAATTGGCAATGGGTGATTCAGAGTCCGACCTGAAGGAGTATTCATTTTGA | 1080 | 43.33 | MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPRQVKESESAIPQLSEALQKQTISVDGENAPKEGKRCSTCNVVVGDAAQFREHHKGEWHKHNVKRKTKNLPPLSEEECRVELAMGDSESDLKEYSF | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6909640 | 6913022 | - | Lsi08G002740.1 | Lsi08g00274 | 668200 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00274 | 359 | SMART | ZnF_U1_5 | 295 | 329 | IPR003604 | GO:0003676|GO:0008270 | |
| Lsi08g00274 | 359 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 359 | IPR039100 | - | |
| Lsi08g00274 | 359 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 300 | 322 | IPR013087 | - | |
| Lsi08g00274 | 359 | Gene3D | - | 1 | 96 | IPR036786 | - | |
| Lsi08g00274 | 359 | Gene3D | - | 174 | 251 | - | - | |
| Lsi08g00274 | 359 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
| Lsi08g00274 | 359 | PANTHER | BNAANNG06530D PROTEIN | 1 | 359 | - | - | |
| Lsi08g00274 | 359 | Gene3D | - | 100 | 172 | IPR037188 | - | |
| Lsi08g00274 | 359 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 231 | IPR002140 | GO:0042256 | |
| Lsi08g00274 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 287 | 329 | IPR036236 | - | |
| Lsi08g00274 | 359 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
| Lsi08g00274 | 359 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
| Lsi08g00274 | 359 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
| Lsi08g00274 | 359 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00274 | K14574 | - | csv:101215380 | 679.478 |